Alexander Churkin

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 7

Top Topics

Dempster Shafer Theory

Design Concepts

Human Agent Interaction

Top Venues

Briefings Bioinform.

Publications

Alma Davidson, Marina Parr, Franziska Totzeck, Alexander Churkin, Danny Barash, Dmitrij Frishman, Tamir Tuller
Evidence of Increased Adaptation of Omicron SARS-CoV-2 Codons to Humans. RECOMB-CG (2024)
Alexander Churkin, Yann Ponty, Danny Barash
IndelsRNAmute: predicting deleterious multiple point substitutions and indels mutations. BMC Bioinform. (8) (2022)
Matan Drory Retwitzer, Vladimir Reinharz, Alexander Churkin, Yann Ponty, Jérôme Waldispühl, Danny Barash
incaRNAfbinv 2.0: a webserver and software with motif control for fragment-based design of RNAs. Bioinform. 36 (9) (2020)
Irina Rabaev, Berat Kurar Barakat, Alexander Churkin, Jihad El-Sana
The HHD Dataset. ICFHR (2020)
Alexander Churkin, Danny Barash
A Biologically Meaningful Extension of the Efficient Method for Deleterious Mutations Prediction in RNAs: Insertions and Deletions in Addition to Substitution Mutations. ISBRA (2018)
Alexander Churkin, Matan Drory Retwitzer, Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl, Danny Barash
Design of RNAs: comparing programs for inverse RNA folding. Briefings Bioinform. 19 (2) (2018)
Vladimir Reinharz, Alexander Churkin, Harel Dahari, Danny Barash
A Robust and Efficient Numerical Method for RNA-Mediated Viral Dynamics. Frontiers Appl. Math. Stat. 3 (2017)
Alexander Churkin, Idan Gabdank, Danny Barash
On topological indices for small RNA graphs. Comput. Biol. Chem. 41 (2012)
Iddo Aviram, Ilia Veltman, Alexander Churkin, Danny Barash
Efficient procedures for the numerical simulation of mid-size RNA kinetics. Algorithms Mol. Biol. 7 (2012)
Danny Barash, Alexander Churkin
Mutational analysis in RNAs: comparing programs for RNA deleterious mutation prediction. Briefings Bioinform. 12 (2) (2011)
Assaf Avihoo, Alexander Churkin, Danny Barash
RNAexinv: An Extended Inverse RNA Folding from Shape and Physical Attributes to Sequences. BMC Bioinform. 12 (2011)
Alexander Churkin, Idan Gabdank, Danny Barash
The RNAmute web server for the mutational analysis of RNA secondary structures. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Alexander Churkin, Moriah Cohen, Yonat Shemer-Avni, Danny Barash
Bioinformatic Analysis of the Neutrality of RNA Secondary Structure Elements across genotypes reveals Evidence for Direct Evolution of Genetic Robustness in HCV. J. Bioinform. Comput. Biol. 8 (6) (2010)
Alexander Churkin, Danny Barash
An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions. BMC Bioinform. 9 (2008)
Alexander Churkin, Danny Barash
Structural Analysis of Single-Point Mutations Given an RNA Sequence: A Case Study with RNAMute. EURASIP J. Adv. Signal Process. 2006 (2006)
Alexander Churkin, Danny Barash
RNAmute: RNA secondary structure mutation analysis tool. BMC Bioinform. 7 (2006)
Alexander Churkin, Danny Barash
Pattern Recognition Method to Detect Vulnerable Spots in an RNA Sequence for Bacterial Resistance to the Antibiotic Spectinomycin. CVPR Workshops (2005)
Alexander Churkin, Ornit Elgad, Oshrat Petgho, Danny Barash
RNAMute: RNA Secondary Structure Mutation Analysis Tool. CSB Workshops (2005)