Karsten Suhre

Publication Activity (10 Years)

Years Active: 2003-2022
Publications (10 Years): 8

Top Topics

Gene Expression

Ensemble Learning

Linear Regression

Top Venues

Briefings Bioinform.

J. Comput. Sci.

Publications

Siyu Han, Jialing Huang, Francesco Foppiano, Cornelia Prehn, Jerzy Adamski, Karsten Suhre, Ying Li, Giuseppe Matullo, Freimut Schliess, Christian Gieger, Annette Peters, Rui Wang-Sattler
TIGER: technical variation elimination for metabolomics data using ensemble learning architecture. Briefings Bioinform. 23 (2) (2022)
Mustafa Buyukozkan, Karsten Suhre, Jan Krumsiek
SGI: automatic clinical subgroup identification in omics datasets. Bioinform. 38 (2) (2022)
Kelsey Chetnik, Elisa Benedetti, Daniel P. Gomari, Annalise Schweickart, Richa Batra, Mustafa Buyukozkan, Zeyu Wang, Matthias Arnold, Jonas Zierer, Karsten Suhre, Jan Krumsiek
maplet: an extensible R toolbox for modular and reproducible metabolomics pipelines. Bioinform. 38 (4) (2022)
Heike Deutelmoser, Dominique Scherer, Hermann Brenner, Melanie Waldenberger, Karsten Suhre, Gabi Kastenmüller, Justo Lorenzo Bermejo
Robust Huber-LASSO for improved prediction of protein, metabolite and gene expression levels relying on individual genotype data. Briefings Bioinform. 22 (4) (2021)
Kieu Trinh Do, David J. N. P. Rasp, Gabi Kastenmüller, Karsten Suhre, Jan Krumsiek
MoDentify: phenotype-driven module identification in metabolomics networks at different resolutions. Bioinform. 35 (3) (2019)
Benjamin B. Sun, Joseph C. Maranville, James E. Peters, David Stacey, James R. Staley, James A. Blackshaw, Stephen Burgess, Tao Jiang, Ellie Paige, Praveen Surendran, Clare Oliver-Williams, Mihir A. Kamat, Bram P. Prins, Sheri K. Wilcox, Erik S. Zimmerman, An Chi, Narinder Bansal, Sarah L. Spain, Angela M. Wood, Nicholas W. Morrell, John R. Bradley, Nebojsa Janjic, David J. Roberts, Willem H. Ouwehand, John A. Todd, Nicole Soranzo, Karsten Suhre, Dirk S. Paul, Caroline S. Fox, Robert M. Plenge, John Danesh, Heiko Runz, Adam S. Butterworth
Genomic atlas of the human plasma proteome. Nat. 558 (7708) (2018)
Sophie Molnos, Clemens Baumbach, Simone Wahl, Martina Müller-Nurasyid, Konstantin Strauch, Rui Wang-Sattler, Melanie Waldenberger, Thomas Meitinger, Jerzy Adamski, Gabi Kastenmüller, Karsten Suhre, Annette Peters, Harald Grallert, Fabian J. Theis, Christian Gieger
pulver: an R package for parallel ultra-rapid p-value computation for linear regression interaction terms. BMC Bioinform. 18 (1) (2017)
Gaurav Thareja, Ziad Kronfol, Karsten Suhre, Pankaj Kumar
A graph based method for depicting population characteristics using Genome Wide Data. J. Comput. Sci. 15 (2016)
Matthias Arnold, Johannes Raffler, Arne Pfeufer, Karsten Suhre, Gabi Kastenmüller
: an interactive, genetic variant-centered annotation browser. Bioinform. 31 (8) (2015)
Simone Wahl, Nora Fenske, Sonja Zeilinger, Karsten Suhre, Christian Gieger, Melanie Waldenberger, Harald Grallert, Matthias Schmid
On the potential of models for location and scale for genome-wide DNA methylation data. BMC Bioinform. 15 (2014)
Zeinab Atieh, Karsten Suhre, Halima Bensmail
-NMR Spectra. ICCS (2013)
Ann-Kristin Petersen, Jan Krumsiek, Brigitte Wägele, Fabian J. Theis, Heinz-Erich Wichmann, Christian Gieger, Karsten Suhre
On the hypothesis-free testing of metabolite ratios in genome-wide and metabolome-wide association studies. BMC Bioinform. 13 (2012)
Hans-Werner Mewes, Andreas Ruepp, Fabian J. Theis, Thomas Rattei, Mathias C. Walter, Dmitrij Frishman, Karsten Suhre, Manuel Spannagl, Klaus F. X. Mayer, Volker Stümpflen, Alexey V. Antonov
MIPS: curated databases and comprehensive secondary data resources in 2010. Nucleic Acids Res. 39 (Database-Issue) (2011)
Jan Krumsiek, Karsten Suhre, Thomas Illig, Jerzy Adamski, Fabian J. Theis
Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data. BMC Syst. Biol. 5 (2011)
Karsten Suhre, Philippe Schmitt-Kopplin
MassTRIX: mass translator into pathways. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Stéphane Betzi, Karsten Suhre, Bernard Chétrit, Françoise Guerlesquin, Xavier Morelli
GFscore: A General Nonlinear Consensus Scoring Function for High-Throughput Docking. J. Chem. Inf. Model. 46 (4) (2006)
Ghislain Bidaut, Karsten Suhre, Jean-Michel Claverie, Michael F. Ochs
Determination of strongly overlapping signaling activity from microarray data. BMC Bioinform. 7 (2006)
François Enault, Karsten Suhre, Jean-Michel Claverie
Phydbac "Gene Function Predictor" : a gene annotation tool based on genomic context analysis. BMC Bioinform. 6 (2005)
Karsten Suhre, Jean-Michel Claverie
FusionDB: a database for in-depth analysis of prokaryotic gene fusion events. Nucleic Acids Res. 32 (Database-Issue) (2004)
Olivier Poirot, Karsten Suhre, Chantal Abergel, Eamonn O'Toole, Cédric Notredame
3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Jean-Baptiste Claude, Karsten Suhre, Cédric Notredame, Jean-Michel Claverie, Chantal Abergel
CaspR: a web server for automated molecular replacement using homology modelling. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
François Enault, Karsten Suhre, Olivier Poirot, Chantal Abergel, Jean-Michel Claverie
Phydbac2: improved inference of gene function using interactive phylogenomic profiling and chromosomal location analysis. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Karsten Suhre, Yves-Henri Sanejouand
ElNémo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
François Enault, Karsten Suhre, Chantal Abergel, Olivier Poirot, Jean-Michel Claverie
Annotation of bacterial genomes using improved phylogenomic profiles. ISMB (Supplement of Bioinformatics) (2003)
Ghislain Bidaut, Karsten Suhre, Jean-Michel Claverie, Michael F. Ochs
Analysis of Phylogenetic Profiles Using Bayesian Decomposition. CSB (2003)
François Enault, Karsten Suhre, Olivier Poirot, Chantal Abergel, Jean-Michel Claverie
Phydbac (phylogenomic display of bacterial genes): an interactive resource for the annotation of bacterial genomes. Nucleic Acids Res. 31 (13) (2003)