Stephan H. Bernhart

Publication Activity (10 Years)

Years Active: 2004-2020
Publications (10 Years): 2

Top Topics

Fractional Brownian Motion

Long Range Correlations

Rna Secondary Structure Prediction

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

J. Bioinform. Comput. Biol.

Publications

Gábor Balogh, Stephan H. Bernhart, Peter F. Stadler, Jana Schor
A probabilistic version of Sankoff's maximum parsimony algorithm. J. Bioinform. Comput. Biol. 18 (1) (2020)
Gero Doose, Stephan H. Bernhart, Rabea Wagener, Steve Hoffmann
DIEGO: detection of differential alternative splicing using Aitchison's geometry. Bioinform. 34 (6) (2018)
Fabian Amman, Stephan H. Bernhart, Gero Doose, Ivo L. Hofacker, Jing Qin, Peter F. Stadler, Sebastian Will
The Trouble with Long-Range Base Pairs in RNA Folding. BSB (2013)
Ronny Lorenz, Stephan H. Bernhart, Jing Qin, Christian Höner zu Siederdissen, Andrea Tanzer, Fabian Amman, Ivo L. Hofacker, Peter F. Stadler
2D Meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (4) (2013)
Ronny Lorenz, Stephan H. Bernhart, Fabian Externbrink, Jing Qin, Christian Höner zu Siederdissen, Fabian Amman, Ivo L. Hofacker, Peter F. Stadler
RNA Folding Algorithms with G-Quadruplexes. BSB (2012)
Ronny Lorenz, Ivo L. Hofacker, Stephan H. Bernhart
Folding RNA/DNA hybrid duplexes. Bioinform. 28 (19) (2012)
Christian Höner zu Siederdissen, Stephan H. Bernhart, Peter F. Stadler, Ivo L. Hofacker
A folding algorithm for extended RNA secondary structures. Bioinform. 27 (13) (2011)
Ronny Lorenz, Stephan H. Bernhart, Christian Höner zu Siederdissen, Hakim Tafer, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker
ViennaRNA Package 2.0. Algorithms Mol. Biol. 6 (2011)
Stephan H. Bernhart, Ulrike Mückstein, Ivo L. Hofacker
RNA Accessibility in cubic time. Algorithms Mol. Biol. 6 (2011)
Andreas R. Gruber, Stephan H. Bernhart, You Zhou, Ivo L. Hofacker
RNALfoldz: Efficient Prediction of Thermodynamically Stable, Local Secondary Structures. GCB (2010)
Ulrike Mückstein, Hakim Tafer, Stephan H. Bernhart, Maribel Hernandez-Rosales, Jörg Vogel, Peter F. Stadler, Ivo L. Hofacker
Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics. BIRD (2008)
Andreas R. Gruber, Stephan H. Bernhart, Ivo L. Hofacker, Stefan Washietl
Strategies for measuring evolutionary conservation of RNA secondary structures. BMC Bioinform. 9 (2008)
Andreas R. Gruber, Ronny Lorenz, Stephan H. Bernhart, Richard Neuböck, Ivo L. Hofacker
The Vienna RNA Websuite. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Stephan H. Bernhart, Ivo L. Hofacker, Sebastian Will, Andreas R. Gruber, Peter F. Stadler
RNAalifold: improved consensus structure prediction for RNA alignments. BMC Bioinform. 9 (2008)
Stephan H. Bernhart, Hakim Tafer, Ulrike Mückstein, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker
Partition function and base pairing probabilities of RNA heterodimers. Algorithms Mol. Biol. 1 (2006)
Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. Bernhart, Peter F. Stadler, Ivo L. Hofacker
Thermodynamics of RNA-RNA binding. Bioinform. 22 (10) (2006)
Stephan H. Bernhart, Ivo L. Hofacker, Peter F. Stadler
Local RNA base pairing probabilities in large sequences. Bioinform. 22 (5) (2006)
Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. Bernhart, Peter F. Stadler, Ivo L. Hofacker
Thermodynamics of RNA-RNA Binding. German Conference on Bioinformatics (2005)
Ivo L. Hofacker, Stephan H. Bernhart, Peter F. Stadler
Alignment of RNA base pairing probability matrices. Bioinform. 20 (14) (2004)