Ronny Lorenz

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 16

Top Topics

Secondary Structure

Soft Constraints

Top Venues

Algorithms Mol. Biol.

GECCO (Companion)

Publications

Sarah von Löhneysen, Thomas Spicher, Yuliia Varenyk, Hua-Ting Yao, Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler
Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure Prediction. J. Comput. Biol. 31 (6) (2024)
Yuliia Varenyk, Thomas Spicher, Ivo L. Hofacker, Ronny Lorenz
Modified RNAs and predictions with the ViennaRNA Package. Bioinform. 39 (11) (2023)
Hua-Ting Yao, Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler
Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package. Algorithms Mol. Biol. 18 (1) (2023)
Sarah von Löhneysen, Thomas Spicher, Yuliia Varenyk, Hua-Ting Yao, Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler
Phylogenetic Information as Soft Constraints in RNA Secondary Structure Prediction. ISBRA (2023)
Maria Waldl, Thomas Spicher, Ronny Lorenz, Irene K. Beckmann, Ivo L. Hofacker, Sarah von Löhneysen, Peter F. Stadler
Local RNA folding revisited. J. Bioinform. Comput. Biol. 21 (4) (2023)
Stefan Badelt, Ronny Lorenz, Ivo L. Hofacker
: heuristic cotranscriptional RNA folding using the nearest neighbor energy model. Bioinform. 39 (1) (2023)
Christoph Flamm, Julia Wielach, Michael T. Wolfinger, Stefan Badelt, Ronny Lorenz, Ivo L. Hofacker
Caveats to Deep Learning Approaches to RNA Secondary Structure Prediction. Frontiers Bioinform. 2 (2022)
Gregor Entzian, Ivo L. Hofacker, Yann Ponty, Ronny Lorenz, Andrea Tanzer
RNAxplorer: harnessing the power of guiding potentials to sample RNA landscapes. Bioinform. 37 (15) (2021)
Ronny Lorenz, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler
Efficient Algorithms for Co-folding of Multiple RNAs. BIOSTEC (Selected Papers) (2020)
Ronny Lorenz, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler
Efficient Computation of Base-pairing Probabilities in Multi-strand RNA Folding. BIOINFORMATICS (2020)
William B. Langdon, Ronny Lorenz
Evolving AVX512 Parallel C Code Using GP. EuroGP (2019)
William B. Langdon, Justyna Petke, Ronny Lorenz
Evolving Better RNAfold Structure Prediction. EuroGP (2018)
William B. Langdon, Ronny Lorenz
Improving SSE parallel code with grow and graft genetic programming. GECCO (Companion) (2017)
Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler
RNA folding with hard and soft constraints. Algorithms Mol. Biol. 11 (2016)
Ronny Lorenz, Dominik Luntzer, Ivo L. Hofacker, Peter F. Stadler, Michael T. Wolfinger
SHAPE directed RNA folding. Bioinform. 32 (1) (2016)
Christopher A. Lavender, Ronny Lorenz, Ge Zhang, Rita Tamayo, Ivo L. Hofacker, Kevin M. Weeks
Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNA. PLoS Comput. Biol. 11 (5) (2015)
Fabian Amman, Michael T. Wolfinger, Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler, Sven Findeiß
TSSAR: TSS annotation regime for dRNA-seq data. BMC Bioinform. 15 (2014)
Ronny Lorenz, Stephan H. Bernhart, Jing Qin, Christian Höner zu Siederdissen, Andrea Tanzer, Fabian Amman, Ivo L. Hofacker, Peter F. Stadler
2D Meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (4) (2013)
Ronny Lorenz, Stephan H. Bernhart, Fabian Externbrink, Jing Qin, Christian Höner zu Siederdissen, Fabian Amman, Ivo L. Hofacker, Peter F. Stadler
RNA Folding Algorithms with G-Quadruplexes. BSB (2012)
Ronny Lorenz, Ivo L. Hofacker, Stephan H. Bernhart
Folding RNA/DNA hybrid duplexes. Bioinform. 28 (19) (2012)
Ronny Lorenz, Stephan H. Bernhart, Christian Höner zu Siederdissen, Hakim Tafer, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker
ViennaRNA Package 2.0. Algorithms Mol. Biol. 6 (2011)
Ronny Lorenz, Christoph Flamm, Ivo L. Hofacker
2D Projections of RNA Folding Landscapes. GCB (2009)
Andreas R. Gruber, Ronny Lorenz, Stephan H. Bernhart, Richard Neuböck, Ivo L. Hofacker
The Vienna RNA Websuite. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)