Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNA.
Christopher A. LavenderRonny LorenzGe ZhangRita TamayoIvo L. HofackerKevin M. WeeksPublished in: PLoS Comput. Biol. (2015)
Keyphrases
- secondary structure
- rna sequences
- model free
- secondary structure of proteins
- rna secondary structure prediction
- sequence similarity
- structural features
- rna molecules
- protein sequences
- computational methods
- protein structure
- amino acids
- reinforcement learning
- protein folding
- rna secondary structures
- amino acid sequences
- function approximation
- protein structure prediction
- sequence alignment
- dna sequences
- hidden markov models
- data mining
- support vector
- machine learning
- similarity measure
- probabilistic model