Partition function and base pairing probabilities of RNA heterodimers.
Stephan H. BernhartHakim TaferUlrike MücksteinChristoph FlammPeter F. StadlerIvo L. HofackerPublished in: Algorithms Mol. Biol. (2006)
Keyphrases
- partition function
- markov random field
- closed form
- upper bound
- probability density function
- approximate inference
- random fields
- belief propagation
- upper and lower bounds
- importance sampling
- structured prediction
- probability distribution
- bayesian framework
- parameter estimation
- maximum likelihood estimation
- structure learning
- belief networks
- graphical models
- message passing
- lower bound
- monte carlo
- special case
- loopy belief propagation
- machine learning
- random variables
- probabilistic inference
- graph cuts
- higher order