Steve Hoffmann

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 10

Top Topics

Multiple Alignment

Alternative Splicing

Systems Biology

Top Venues

Briefings Bioinform.

Algorithms Mol. Biol.

it Inf. Technol.

Publications

Aimer Gutierrez-Diaz, Steve Hoffmann, Juan Carlos Gallego-Gómez, Clara Bermudez-Santana
Systematic computational hunting for small RNAs derived from ncRNAs during dengue virus infection in endothelial HMEC-1 cells. Frontiers Bioinform. 4 (2024)
Felix M. Weidner, Julian D. Schwab, Sabine Wölk, Felix Rupprecht, Nensi Ikonomi, Silke D. Werle, Steve Hoffmann, Michael Kühl, Hans A. Kestler
Leveraging quantum computing for dynamic analyses of logical networks in systems biology. Patterns 4 (3) (2023)
Robert Schwarz, Philipp Koch, Jeanne Wilbrandt, Steve Hoffmann
Locus-specific expression analysis of transposable elements. Briefings Bioinform. 23 (1) (2022)
Gerhard Mayer, Wolfgang Müller, Karin Schork, Julian Uszkoreit, Andreas Weidemann, Ulrike Wittig, Maja Rey, Christian Quast, Janine Felden, Frank Oliver Glöckner, Matthias Lange, Daniel Arend, Sebastian Beier, Astrid Junker, Uwe Scholz, Danuta Schüler, Hans A. Kestler, Daniel Wibberg, Alfred Pühler, Sven Twardziok, Jürgen Eils, Roland Eils, Steve Hoffmann, Martin Eisenacher, Michael Turewicz
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases. Briefings Bioinform. 22 (5) (2021)
Manuela M. do Almo, Isabel G. Sousa, Waldeyr Mendes Cordeiro da Silva, Thomas Gatter, Peter F. Stadler, Steve Hoffmann, Andrea Queiroz Maranhão, Marcelo M. Brigido
Anti-CD3 Stimulated T Cell Transcriptome Reveals Novel ncRNAs and Correlates with a Suppressive Profile. BSB (2020)
Gero Doose, Stephan H. Bernhart, Rabea Wagener, Steve Hoffmann
DIEGO: detection of differential alternative splicing using Aitchison's geometry. Bioinform. 34 (6) (2018)
Björn A. Grüning, Jörg Fallmann, Dilmurat Yusuf, Sebastian Will, Anika Erxleben, Florian Eggenhofer, Torsten Houwaart, Bérénice Batut, Pavankumar Videm, Andrea Bagnacani, Markus Wolfien, Steffen Lott, Youri Hoogstrate, Wolfgang R. Hess, Olaf Wolkenhauer, Steve Hoffmann, Altuna Akalin, Uwe Ohler, Peter F. Stadler, Rolf Backofen
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Helene Kretzmer, Christian Otto, Steve Hoffmann
BAT: Bisulfite Analysis Toolkit. F1000Research 6 (2017)
Felipe A. Louza, Guilherme P. Telles, Steve Hoffmann, Cristina Dutra de Aguiar Ciferri
Generalized enhanced suffix array construction in external memory. Algorithms Mol. Biol. 12 (1) (2017)
Steve Hoffmann, Peter F. Stadler
Read mapping. it Inf. Technol. 58 (3) (2016)
Steve Hoffmann, Peter F. Stadler, Korbinian Strimmer
A simple data-adaptive probabilistic variant calling model. Algorithms Mol. Biol. 10 (2015)
Stefan Rank, Steve Hoffmann, Hans-Georg Struck, Ulrike Spierling, Simon Mayr, Paolo Petta
Authoring vs. Configuring Affective Agents for Interactive Storytelling. Appl. Artif. Intell. 28 (6) (2014)
Christian Otto, Peter F. Stadler, Steve Hoffmann
Lacking alignments? The next-generation sequencing mapper segemehl revisited. Bioinform. 30 (13) (2014)
Steve Hoffmann
Genominformatische Verfahren zur Analyse von Daten der Hochdurchsatzsequenzierung. Ausgezeichnete Informatikdissertationen (2014)
David Langenberger, Sachin Pundhir, Claus Thorn Ekstrøm, Peter F. Stadler, Steve Hoffmann, Jan Gorodkin
deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns. Bioinform. 28 (1) (2012)
Christian Otto, Peter F. Stadler, Steve Hoffmann
Fast and sensitive mapping of bisulfite-treated sequencing data. Bioinform. 28 (13) (2012)
Stefan Rank, Steve Hoffmann, Hans-Georg Struck, Ulrike Spierling, Paolo Petta
Creativity in Configuring Affective Agents for Interactive Storytelling. ICCC (2012)
David Langenberger, Sebastian Bartschat, Jana Hertel, Steve Hoffmann, Hakim Tafer, Peter F. Stadler
MicroRNA or Not MicroRNA? BSB (2011)
Mario Fasold, David Langenberger, Hans Binder, Peter F. Stadler, Steve Hoffmann
DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Christian Otto, Steve Hoffmann, Jan Gorodkin, Peter F. Stadler
Fast local fragment chaining using sum-of-pair gap costs. Algorithms Mol. Biol. 6 (2011)
Florian Glock, Anne Junker, Marina Kraus, Christian Lehrian, Alexander Schäfer, Steve Hoffmann, Ulrike Spierling
"Office Brawl": a conversational storytelling game and its creation process. Advances in Computer Entertainment Technology (2011)
Kim Dung Dang, Steve Hoffmann, Ronan Champagnat, Ulrike Spierling
How Authors Benefit from Linear Logic in the Authoring Process of Interactive Storyworlds. ICIDS (2011)
Ulrike Spierling, Nicolas Szilas, Steve Hoffmann, Urs Richle
Tutorial: Introduction to Interactive Story Creation. ICIDS (2010)
Cynthia M. Sharma, Steve Hoffmann, Fabien Darfeuille, Jérémy Reignier, Sven Findeiß, Alexandra Sittka, Sandrine Chabas, Kristin Reiche, Jörg Hackermüller, Richard Reinhardt, Peter F. Stadler, Jörg Vogel
. Nat. 464 (7286) (2010)
David Langenberger, Clara Bermudez-Santana, Peter F. Stadler, Steve Hoffmann
Identification and Classification of Small RNAs in Transcriptome Sequence Data. Pacific Symposium on Biocomputing (2010)
Ulrike Spierling, Nicolas Szilas, Steve Hoffmann, Urs Richle
Workshop: Education in Interactive Digital Storytelling. ICIDS (2010)
Ulrike Spierling, Steve Hoffmann
Exploring Narrative Interpretation and Adaptation for Interactive Story Creation. ICIDS (2010)
David Langenberger, Clara Bermudez-Santana, Jana Hertel, Steve Hoffmann, Philipp Khaitovich, Peter F. Stadler
Evidence for human microRNA-offset RNAs in small RNA sequencing data. Bioinform. 25 (18) (2009)
Steve Hoffmann, Christian Otto, Stefan Kurtz, Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller
Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures. PLoS Comput. Biol. 5 (9) (2009)
K. Scheibye-Alsing, Steve Hoffmann, A. Frankel, Peter Jensen, Peter F. Stadler, Y. Mang, Niels Tommerup, M. J. Gilchrist, A.-B. Nygård, Susanna Cirera, Claus B. Jørgensen, Merete Fredholm, Jan Gorodkin
Sequence assembly. Comput. Biol. Chem. 33 (2) (2009)
Konrad Büssow, Steve Hoffmann, Volker Sievert
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files. BMC Bioinform. 3 (2002)