Uwe Ohler

Publication Activity (10 Years)

Years Active: 1998-2022
Publications (10 Years): 11

Top Topics

Gene Expression

Secondary Structure Of Proteins

Top Venues

Nucleic Acids Res.

Dagstuhl Reports

BMC Medical Informatics Decis. Mak.

Publications

Jes-Niels Boeckel, Maximilian Möbius-Winkler, Marion Müller, Sabine Rebs, Nicole Eger, Laura Schoppe, Rewati Tappu, Karoline E. Kokot, Jasmin M. Kneuer, Susanne Gaul, Diana M. Bordalo, Alan Lai, Jan Haas, Mahsa Ghanbari, Philipp Drewe-Boss, Martin Liss, Hugo A. Katus, Uwe Ohler, Michael Gotthardt, Ulrich Laufs, Katrin Streckfuss-Bömeke, Benjamin Meder
SLM2 Is A Novel Cardiac Splicing Factor Involved in Heart Failure due to Dilated Cardiomyopathy. Genom. Proteom. Bioinform. 20 (1) (2022)
Wolfgang Kopp, Altuna Akalin, Uwe Ohler
Simultaneous dimensionality reduction and integration for single-cell ATAC-seq data using deep learning. Nat. Mach. Intell. 4 (2) (2022)
Philipp Drewe-Boss, Dirk Enders, Jochen Walker, Uwe Ohler
Deep learning for prediction of population health costs. BMC Medical Informatics Decis. Mak. 22 (1) (2022)
Christopher Lance, Malte D. Lücken, Daniel B. Burkhardt, Robrecht Cannoodt, Pia Rautenstrauch, Anna Laddach, Aidyn Ubingazhibov, Zhi-Jie Cao, Kaiwen Deng, Sumeer Khan, Qiao Liu, Nikolay Russkikh, Gleb Ryazantsev, Uwe Ohler, Angela Oliveira Pisco, Jonathan Bloom, Smita Krishnaswamy, Fabian J. Theis
Multimodal single cell data integration challenge: Results and lessons learned. NeurIPS (Competition and Demos) (2021)
Philipp Drewe-Boss, Dirk Enders, Jochen Walker, Uwe Ohler
Deep learning for prediction of population health costs. CoRR (2020)
Rolf Backofen, Yael Mandel-Gutfreund, Uwe Ohler, Gabriele Varani
Advances and Challenges in Protein-RNA Recognition, Regulation and Prediction (Dagstuhl Seminar 19342). Dagstuhl Reports 9 (8) (2019)
Alina Munteanu, Neelanjan Mukherjee, Uwe Ohler
SSMART: sequence-structure motif identification for RNA-binding proteins. Bioinform. 34 (23) (2018)
Björn A. Grüning, Jörg Fallmann, Dilmurat Yusuf, Sebastian Will, Anika Erxleben, Florian Eggenhofer, Torsten Houwaart, Bérénice Batut, Pavankumar Videm, Andrea Bagnacani, Markus Wolfien, Steffen Lott, Youri Hoogstrate, Wolfgang R. Hess, Olaf Wolkenhauer, Steve Hoffmann, Altuna Akalin, Uwe Ohler, Peter F. Stadler, Rolf Backofen
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Rolf Backofen, Yael Mandel-Gutfreund, Uwe Ohler, Gabriele Varani
Computational Challenges in RNA-Based Gene Regulation: Protein-RNA Recognition, Regulation and Prediction (Dagstuhl Seminar 17252). Dagstuhl Reports 7 (6) (2017)
Michael Piechotta, Emanuel Wyler, Uwe Ohler, Markus Landthaler, Christoph Dieterich
JACUSA: site-specific identification of RNA editing events from replicate sequencing data. BMC Bioinform. 18 (1) (2017)
Wanja Kassuhn, Uwe Ohler, Philipp Drewe
Cseq-Simulator: A Data Simulator for CLIP-Seq Experiments. PSB (2016)
Mahmoud M. Ibrahim, Scott A. Lacadie, Uwe Ohler
JAMM: a peak finder for joint analysis of NGS replicates. Bioinform. 31 (1) (2015)
Alina Munteanu, Uwe Ohler, Raluca Gordân
COUGER - co-factors associated with uniquely-bound genomic regions. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
William H. Majoros, Niel Lebeck, Uwe Ohler, Song Li
Improved transcript isoform discovery using ORF graphs. Bioinform. 30 (14) (2014)
Iulian Pruteanu-Malinici, William H. Majoros, Uwe Ohler
Automated annotation of gene expression image sequences via non-parametric factor analysis and conditional random fields. Bioinform. 29 (13) (2013)
Dina Hafez, Ting Ni, Sayan Mukherjee, Jun Zhu, Uwe Ohler
Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation. Bioinform. 29 (13) (2013)
Iulian Pruteanu-Malinici, Daniel L. Mace, Uwe Ohler
Automatic Annotation of Spatial Expression Patterns via Sparse Bayesian Factor Models. PLoS Comput. Biol. 7 (7) (2011)
Jiandong Ding, Shusi Yu, Uwe Ohler, Jihong Guan, Shuigeng Zhou
imiRTP: An Integrated Method to Identifying miRNA-target Interactions in Arabidopsis thaliana. BIBM (2011)
Daniel L. Mace, Nicole Varnado, Weiping Zhang, Erwin Frise, Uwe Ohler
hybridization images. Bioinform. 26 (6) (2010)
Arunachalam Manonmani, Karthik Jayasurya, Pavel Tomancak, Uwe Ohler
genomes. Bioinform. 26 (17) (2010)
William H. Majoros, Uwe Ohler
Modeling the Evolution of Regulatory Elements by Simultaneous Detection and Alignment with Phylogenetic Pair HMMs. PLoS Comput. Biol. 6 (12) (2010)
William H. Majoros, Uwe Ohler
Complexity reduction in context-dependent DNA substitution models. Bioinform. 25 (2) (2009)
Dirk Holste, Uwe Ohler
Strategies for Identifying RNA Splicing Regulatory Motifs and Predicting Alternative Splicing Events. PLoS Comput. Biol. 4 (1) (2008)
Daniel L. Mace, Jiyoung Lee, Richard W. Twigg, Juliette Colinas, Philip N. Benfey, Uwe Ohler
Quantification of transcription factor expression from Arabidopsis images. ISMB (Supplement of Bioinformatics) (2006)
Leelavati Narlikar, Raluca Gordân, Uwe Ohler, Alexander J. Hartemink
motif discovery. ISMB (Supplement of Bioinformatics) (2006)
William H. Majoros, Uwe Ohler
Advancing the State of the Art in Computational Gene Prediction. KDECB (2006)
Weichun Huang, David M. Umbach, Uwe Ohler, Leping Li
Optimized mixed Markov models for motif identification. BMC Bioinform. 7 (2006)
Uwe Ohler, Noam Shomron, Christopher B. Burge
Recognition of Unknown Conserved Alternatively Spliced Exons. PLoS Comput. Biol. 1 (2) (2005)
Uwe Ohler, Heinrich Niemann, Guo-chun Liao, Gerald M. Rubin
Joint modeling of DNA sequence and physical properties to improve eukaryotic promoter recognition. ISMB (Supplement of Bioinformatics) (2001)
Uwe Ohler, Stefan Harbeck, Heinrich Niemann
Discriminative training of language model classifiers. EUROSPEECH (1999)
Stefan Harbeck, Uwe Ohler, Elmar Nöth, Heinrich Niemann
Information Theoretic Based Segments for Language Identification. TSD (1999)
Stefan Harbeck, Uwe Ohler
Multigrams for language identification. EUROSPEECH (1999)
Uwe Ohler, Stefan Harbeck, Heinrich Niemann, Elmar Nöth, Martin G. Reese
Interpolated markov chains for eukaryotic promoter recognition. Bioinform. 15 (5) (1999)
Uwe Ohler, Heinrich Niemann
Stochastic Language Models for Content Based DNA Sequence Classification. German Conference on Bioinformatics (1998)