Martin Raden

Publication Activity (10 Years)

Years Active: 2018-2021
Publications (10 Years): 11

Top Topics

Guided Exploration

Rna Secondary Structure Prediction

Negatively Correlated

Top Venues

Nucleic Acids Res.

Publications

Omer S. Alkhnbashi, Alexander Mitrofanov, Robson Bonidia, Martin Raden, Van Dinh Tran, Florian Eggenhofer, Shiraz A. Shah, Ekrem Öztürk, Victor Alexandre Padilha, Danilo Sipoli Sanches, André C. P. L. F. de Carvalho, Rolf Backofen
CRISPRloci: comprehensive and accurate annotation of CRISPR-Cas systems. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Martin Raden, Teresa Müller, Stefan Mautner, Rick Gelhausen, Rolf Backofen
The impact of various seed, accessibility and interaction constraints on sRNA target prediction- a systematic assessment. BMC Bioinform. 21 (1) (2020)
Gregor Entzian, Martin Raden
pourRNA - a time- and memory-efficient approach for the guided exploration of RNA energy landscapes. Bioinform. 36 (2) (2020)
Milad Miladi, Martin Raden, Sven Diederichs, Rolf Backofen
MutaRNA: analysis and visualization of mutation-induced changes in RNA structure. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Milad Miladi, Martin Raden, Sebastian Will, Rolf Backofen
Fast and accurate structure probability estimation for simultaneous alignment and folding of RNAs with Markov chains. Algorithms Mol. Biol. 15 (1) (2020)
Milad Miladi, Soheila Montaseri, Rolf Backofen, Martin Raden
Integration of accessibility data from structure probing into RNA-RNA interaction prediction. Bioinform. 35 (16) (2019)
Rick Gelhausen, Sebastian Will, Ivo L. Hofacker, Rolf Backofen, Martin Raden
IntaRNAhelix-composing RNA-RNA interactions from stable inter-molecular helices boosts bacterial sRNA target prediction. J. Bioinform. Comput. Biol. 17 (5) (2019)
Milad Miladi, Martin Raden, Sebastian Will, Rolf Backofen
Fast and Accurate Structure Probability Estimation for Simultaneous Alignment and Folding of RNAs. WABI (2019)
Rick Gelhausen, Sebastian Will, Ivo L. Hofacker, Rolf Backofen, Martin Raden
Constraint Maximal Inter-molecular Helix Lengths within RNA-RNA Interaction Prediction Improves Bacterial sRNA Target Prediction. BIOINFORMATICS (2019)
Stefan Mautner, Soheila Montaseri, Milad Miladi, Martin Raden, Fabrizio Costa, Rolf Backofen
ShaKer: RNA SHAPE prediction using graph kernel. Bioinform. 35 (14) (2019)
Martin Raden, Syed M. Ali, Omer S. Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A. Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen Lott, Mostafa M. Mohamed, Alexander Mattheis, Milad Miladi, Andreas S. Richter, Sebastian Will, Joachim Wolff, Patrick R. Wright, Rolf Backofen
Freiburg RNA tools: a central online resource for RNA-focused research and teaching. Nucleic Acids Res. 46 (Webserver-Issue) (2018)