Christian M. Reidys

Publication Activity (10 Years)

Years Active: 1995-2024
Publications (10 Years): 19

Top Topics

Metropolis Hastings

Computational Biology

Secondary Structure

Top Venues

J. Comput. Biol.

Algorithms Mol. Biol.

Publications

Christopher Barrett, Andrei C. Bura, Fenix Huang, Christian M. Reidys
The site linkage spectrum of data arrays. CoRR (2024)
Pavel A. Pevzner, Martin Vingron, Christian M. Reidys, Fengzhu Sun, Sorin Istrail
Michael Waterman's Contributions to Computational Biology and Bioinformatics. J. Comput. Biol. 29 (7) (2022)
Andrei C. Bura, Neelav S. Dutta, Thomas J. X. Li, Christian M. Reidys
A computational framework for weighted simplicial homology. CoRR (2022)
Andrei C. Bura, Qijun He, Christian M. Reidys
Loop homology of bi-secondary structures. Discret. Math. 344 (6) (2021)
Christopher L. Barrett, Andrei C. Bura, Qijun He, Fenix W. D. Huang, Thomas J. X. Li, Michael S. Waterman, Christian M. Reidys
Multiscale Feedback Loops in SARS-CoV-2 Viral Evolution. J. Comput. Biol. 28 (3) (2021)
Fenix W. D. Huang, Christopher L. Barrett, Christian M. Reidys
The energy-spectrum of bicompatible sequences. Algorithms Mol. Biol. 16 (1) (2021)
Thomas J. X. Li, Christian M. Reidys
On an enhancement of RNA probing data using information theory. Algorithms Mol. Biol. 15 (1) (2020)
Christopher L. Barrett, Qijun He, Fenix W. D. Huang, Christian M. Reidys
A Boltzmann Sampler for 1-Pairs with Double Filtration. J. Comput. Biol. 26 (3) (2019)
Thomas J. X. Li, Christian M. Reidys
On an enhancement of RNA probing data using Information Theory. CoRR (2019)
Ricky X. F. Chen, Andrei C. Bura, Christian M. Reidys
D-Chain Tomography of Networks: A New Structure Spectrum and an Application to the SIR Process. SIAM J. Appl. Dyn. Syst. 18 (4) (2019)
Reza Rezazadegan, Christian M. Reidys
Degeneracy and genetic assimilation in RNA evolution. BMC Bioinform. 19 (1) (2018)
Christopher L. Barrett, Qijun He, Fenix W. D. Huang, Christian M. Reidys
An Efficient Dual Sampling Algorithm with Hamming Distance Filtration. J. Comput. Biol. 25 (11) (2018)
Ricky X. F. Chen, Christian M. Reidys, Andrei C. Bura
Network tomography: a new structure spectrum for studying network dynamics. CoRR (2018)
Christopher L. Barrett, Fenix W. D. Huang, Christian M. Reidys
Sequence-structure relations of biopolymers. Bioinform. 33 (3) (2017)
Fenix W. D. Huang, Christian M. Reidys
A topological framework for signed permutations. Discret. Math. 340 (9) (2017)
Ricky X. F. Chen, Christian M. Reidys
A Combinatorial Identity Concerning Plane Colored Trees and its Applications. J. Integer Seq. 20 (3) (2017)
Ricky X. F. Chen, Christian M. Reidys
Plane Permutations and Applications to a Result of Zagier-Stanley and Distances of Permutations. SIAM J. Discret. Math. 30 (3) (2016)
Fenix W. D. Huang, Christian M. Reidys
Topological language for RNA. CoRR (2016)
Christopher L. Barrett, Thomas J. X. Li, Christian M. Reidys
RNA Secondary Structures Having a Compatible Sequence of Certain Nucleotide Ratios. J. Comput. Biol. 23 (11) (2016)
Christopher L. Barrett, Fenix W. D. Huang, Christian M. Reidys
Evidence of higher order patterns in information transmission between nucleotide sequences and folded molecular shapes of RNA. BICT (2015)
Ricky X. F. Chen, Christian M. Reidys
A simple framework on sorting permutations. CoRR (2015)
Hillary S. W. Han, Thomas J. X. Li, Christian M. Reidys
-Structures. J. Comput. Biol. 21 (8) (2014)
Benjamin M. M. Fu, Christian M. Reidys
Shapes of Interacting RNA Complexes. J. Comput. Biol. 21 (9) (2014)
Christian M. Reidys, Emma Yu Jin
The evolution of the random reversal graph. Appl. Math. Comput. 227 (2014)
Fenix W. D. Huang, Markus E. Nebel, Christian M. Reidys
Uniform generation of RNA pseudoknot structures with genus filtration CoRR (2013)
Jing Qin, Christian M. Reidys
On Topological RNA Interaction Structures. J. Comput. Biol. 20 (7) (2013)
Fenix W. D. Huang, Christian M. Reidys
On the combinatorics of sparsification. Algorithms Mol. Biol. 7 (2012)
Ivo L. Hofacker, Christian M. Reidys, Peter F. Stadler
Symmetric circular matchings and RNA folding. Discret. Math. 312 (1) (2012)
Hillary S. W. Han, Christian M. Reidys
The 5′-3′ Distance of RNA Secondary Structures. J. Comput. Biol. 19 (7) (2012)
Hillary S. W. Han, Christian M. Reidys
A Phase Transition in Energy-Filtered RNA Secondary Structures. J. Comput. Biol. 19 (10) (2012)
Jørgen E. Andersen, Fenix W. D. Huang, Robert C. Penner, Christian M. Reidys
Topology of RNA-RNA Interaction Structures. J. Comput. Biol. 19 (7) (2012)
Christian M. Reidys, Fenix W. D. Huang, Jørgen E. Andersen, Robert C. Penner, Peter F. Stadler, Markus E. Nebel
Addendum: topology and prediction of RNA pseudoknots. Bioinform. 28 (2) (2012)
Andrew X. Li, Manja Marz, Jing Qin, Christian M. Reidys
RNA-RNA interaction prediction based on multiple sequence alignments. Bioinform. 27 (4) (2011)
Markus E. Nebel, Christian M. Reidys, Rita R. Wang
Loops in Canonical RNA Pseudoknot Structures. J. Comput. Biol. 18 (12) (2011)
Emma Yu Jin, Christian M. Reidys
Random induced subgraphs of Cayley graphs induced by transpositions. Discret. Math. 311 (21) (2011)
Christian M. Reidys, Fenix W. D. Huang, Jørgen E. Andersen, Robert C. Penner, Peter F. Stadler, Markus E. Nebel
Topology and prediction of RNA pseudoknots. Bioinform. 27 (8) (2011)
Emma Yu Jin, Christian M. Reidys
RNA pseudoknot structures with arc-length >=3 and stack-length >=sigma. Discret. Appl. Math. 158 (1) (2010)
Emma Yu Jin, Christian M. Reidys
-noncrossing RNA structures. Adv. Appl. Math. 44 (1) (2010)
Christian M. Reidys, Rita R. Wang, Albus Y. Y. Zhao
-Noncrossing Diagrams. Electron. J. Comb. 17 (1) (2010)
James Z. M. Gao, Linda Y. M. Li, Christian M. Reidys
Inverse folding of RNA pseudoknot structures. Algorithms Mol. Biol. 5 (2010)
Fenix W. D. Huang, Jing Qin, Christian M. Reidys, Peter F. Stadler
Target prediction and a statistical sampling algorithm for RNA-RNA interaction. Bioinform. 26 (2) (2010)
Christian M. Reidys, Rita R. Wang
Shapes of RNA Pseudoknot Structures. J. Comput. Biol. 17 (11) (2010)
Fenix W. D. Huang, Christian M. Reidys
On the Uniform Generation of Modular Diagrams. Electron. J. Comb. 17 (1) (2010)
Fenix W. D. Huang, Jing Qin, Christian M. Reidys, Peter F. Stadler
Partition function and base pairing probabilities for RNA-RNA interaction prediction. Bioinform. 25 (20) (2009)
Fenix W. D. Huang, Linda Y. M. Li, Christian M. Reidys
Sequence-structure relations of pseudoknot RNA. BMC Bioinform. 10 (S-1) (2009)
Fenix W. D. Huang, Wade W. J. Peng, Christian M. Reidys
Folding 3-Noncrossing RNA Pseudoknot Structures. J. Comput. Biol. 16 (11) (2009)
William Y. C. Chen, Jing Qin, Christian M. Reidys, Doron Zeilberger
Efficient Counting and Asymptotics of k-Noncrossing Tangled Diagrams. Electron. J. Comb. 16 (1) (2009)
Emma Yu Jin, Christian M. Reidys
Combinatorial design of pseudoknot RNA. Adv. Appl. Math. 42 (2) (2009)
Christian M. Reidys
Large components in random induced subgraphs of n-cubes. Discret. Math. 309 (10) (2009)
Gang Ma, Christian M. Reidys
Canonical RNA Pseudoknot Structures. J. Comput. Biol. 15 (10) (2008)
Christian M. Reidys
Combinatorics of sequential dynamical systems. Discret. Math. 308 (4) (2008)
Hillary S. W. Han, Christian M. Reidys
Pseudoknot RNA Structures with Arc-Length >= 4. J. Comput. Biol. 15 (9) (2008)
William Y. C. Chen, Jing Qin, Christian M. Reidys
Crossings and Nestings in Tangled Diagrams. Electron. J. Comb. 15 (1) (2008)
Stephan J. Eidenbenz, Anders A. Hansson, Venkatesh Ramaswamy, Christian M. Reidys
On a New Class of Load Balancing Network Protocols. Adv. Complex Syst. 10 (3) (2007)
Christian M. Reidys
On certain morphisms of sequential dynamical systems. Discret. Math. 296 (2-3) (2005)
Anders Å. Hansson, Henning S. Mortveit, Christian M. Reidys
On Asynchronous Cellular Automata. Adv. Complex Syst. 8 (4) (2005)
Henning S. Mortveit, Christian M. Reidys
Neutral Evolution and Mutation Rates of Sequential Dynamical Systems. Adv. Complex Syst. 7 (3-4) (2004)
Henning S. Mortveit, Christian M. Reidys
Reduction of Discrete Dynamical Systems over Graphs. Adv. Complex Syst. 7 (1) (2004)
Christopher L. Barrett, Henning S. Mortveit, Christian M. Reidys
ETS IV: Sequential dynamical systems: fixed points, invertibility and equivalence. Appl. Math. Comput. 134 (1) (2003)
Christian M. Reidys
Distances In Random Induced Subgraphs Of Generalized N-Cubes. Comb. Probab. Comput. 11 (6) (2002)
Christian M. Reidys, Peter F. Stadler
Combinatorial Landscapes. SIAM Rev. 44 (1) (2002)
Christopher L. Barrett, Henning S. Mortveit, Christian M. Reidys
Sequential dynamical systems. Artif. Life Robotics 6 (4) (2002)
Christopher L. Barrett, Henning S. Mortveit, Christian M. Reidys
Elements of a theory of simulation III: equivalence of SDS. Appl. Math. Comput. 122 (3) (2001)
Christian M. Reidys, Peter F. Stadler
Neutrality in fitness landscapes. Appl. Math. Comput. 117 (2-3) (2001)
Christian M. Reidys
On Acyclic Orientations and Sequential Dynamical Systems. Adv. Appl. Math. 27 (4) (2001)
Henning S. Mortveit, Christian M. Reidys
Discrete, sequential dynamical systems. Discret. Math. 226 (1-3) (2001)
Christopher L. Barrett, B. W. Bush, Stephan Kopp, Henning S. Mortveit, Christian M. Reidys
Sequential Dynamical Systems and Applications to Simulations. Annual Simulation Symposium (2000)
Christopher L. Barrett, Henning S. Mortveit, Christian M. Reidys
Elements of a theory of simulation II: sequential dynamical systems. Appl. Math. Comput. 107 (2-3) (2000)
Christian M. Reidys
-Groups. Eur. J. Comb. 21 (8) (2000)
Christopher L. Barrett, Christian M. Reidys
Elements of a theory of computer simulation I: Sequential CA over random graphs. Appl. Math. Comput. 98 (2-3) (1999)
Stephan Kopp, Christian M. Reidys
Neutral networks: a combinatorial perspective. Adv. Complex Syst. 2 (3) (1999)
Christian V. Forst, Christian M. Reidys
Neutral Evolutionary Dynamics. German Conference on Bioinformatics (1996)
Christian M. Reidys, Peter F. Stadler
Bio-molecular Shapes and Algebraic Structures. Comput. Chem. 20 (1) (1996)
Christian V. Forst, Christian M. Reidys, Jacqueline Weber
Evolutionary Dynamics and Optimization: Neutral Networks as Model-Landscapes for RNA Secondary-Structure Folding-Landscapes. ECAL (1995)