Dennis Kostka

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 7

Top Topics

Spoken Documents

Factor Analysis

Top Venues

PLoS Comput. Biol.

Publications

Ali Tugrul Balci1, Mark Maher Ebeid, Panayiotis V. Benos, Dennis Kostka, Maria Chikina
An intrinsically interpretable neural network architecture for sequence-to-function learning. Bioinform. 39 (Supplement-1) (2023)
Hannah Schriever, Dennis Kostka
Vaeda computationally annotates doublets in single-cell RNA sequencing data. Bioinform. 39 (1) (2023)
Jonathan Klonowski, Qianqian Liang, Zeynep H. Coban Akdemir, Cecilia Lo, Dennis Kostka
aenmd: annotating escape from nonsense-mediated decay for transcripts with protein-truncating variants. Bioinform. 39 (9) (2023)
Weiguang Mao, Maziyar Baran Pouyan, Dennis Kostka, Maria Chikina
Non-negative Independent Factor Analysis disentangles discrete and continuous sources of variation in scRNA-seq data. Bioinform. 38 (10) (2022)
Abha S. Bais, Dennis Kostka
scds: computational annotation of doublets in single-cell RNA sequencing data. Bioinform. 36 (4) (2020)
Markus List, Azim Dehghani Amirabad, Dennis Kostka, Marcel H. Schulz
Large-scale inference of competing endogenous RNA networks with sparse partial correlation. Bioinform. 35 (14) (2019)
Maziyar Baran Pouyan, Dennis Kostka
Random forest based similarity learning for single cell RNA sequencing data. Bioinform. 34 (13) (2018)
Genevieve D. Erwin, Nir Oksenberg, Rebecca M. Truty, Dennis Kostka, Karl K. Murphy, Nadav Ahituv, Katherine S. Pollard, John A. Capra
Integrating Diverse Datasets Improves Developmental Enhancer Prediction. PLoS Comput. Biol. 10 (6) (2014)
John A. Capra, Dennis Kostka
Modeling DNA methylation dynamics with approaches from phylogenetics. Bioinform. 30 (17) (2014)
Dennis Kostka, Rainer Spang
Microarray Based Diagnosis Profits from Better Documentation of Gene Expression Signatures. PLoS Comput. Biol. 4 (2) (2008)
Juby Jacob, Marcel Jentsch, Dennis Kostka, Stefan Bentink, Rainer Spang
Detecting hierarchical structure in molecular characteristics of disease using transitive approximations of directed graphs. Bioinform. 24 (7) (2008)
Holger Fröhlich, Tim Beißbarth, Achim Tresch, Dennis Kostka, Juby Jacob, Rainer Spang, Florian Markowetz
Analyzing gene perturbation screens with nested effects models in R and bioconductor. Bioinform. 24 (21) (2008)
Ho-Ryun Chung, Dennis Kostka, Martin Vingron
A physical model for tiling array analysis. ISMB/ECCB (Supplement of Bioinformatics) (2007)
Florian Markowetz, Dennis Kostka, Olga G. Troyanskaya, Rainer Spang
Nested effects models for high-dimensional phenotyping screens. ISMB/ECCB (Supplement of Bioinformatics) (2007)
Dennis Kostka, Rainer Spang
Finding disease specific alterations in the co-expression of genes. ISMB/ECCB (Supplement of Bioinformatics) (2004)