Achim Tresch

Publication Activity (10 Years)

Years Active: 2007-2019
Publications (10 Years): 2

Top Topics

High Throughput

Dependence Structure

Quantitative Analysis

Top Venues

PLoS Comput. Biol.

Publications

Henrik Failmezger, Ezgi Dursun, Sebastian Dümcke, Max Endele, Don Poron, Timm Schroeder, Anne Krug, Achim Tresch
Clustering of samples with a tree-shaped dependence structure, with an application to microscopic time lapse imaging. Bioinform. 35 (13) (2019)
Georg Stricker, Alexander Engelhardt, Daniel Schulz, Matthias Schmid, Achim Tresch, Julien Gagneur
GenoGAM: genome-wide generalized additive models for ChIP-Seq analysis. Bioinform. 33 (15) (2017)
Theresa Niederberger, Henrik Failmezger, Diana Uskat, Don Poron, Ingmar Glauche, Nico Scherf, Ingo Roeder, Timm Schroeder, Achim Tresch
Factor graph analysis of live cell-imaging data reveals mechanisms of cell fate decisions. Bioinform. 31 (11) (2015)
Sebastian Dümcke, Johannes Bräuer, Benedict Anchang, Rainer Spang, Niko Beerenwinkel, Achim Tresch
Exact likelihood computation in Boolean networks with probabilistic time delays, and its application in signal network reconstruction. Bioinform. 30 (3) (2014)
Kemal Akman, Thomas Haaf, Silvia Gravina, Jan Vijg, Achim Tresch
Genome-wide quantitative analysis of DNA methylation from bisulfite sequencing data. Bioinform. 30 (13) (2014)
Henrik Failmezger, Paurush Praveen, Achim Tresch, Holger Fröhlich
Learning gene network structure from time laps cell imaging in RNAi Knock downs. Bioinform. 29 (12) (2013)
Henrik Failmezger, Holger Fröhlich, Achim Tresch
Unsupervised automated high throughput phenotyping of RNAi time-lapse movies. BMC Bioinform. 14 (2013)
Henrik Failmezger, Benjamin Jaegle, Andrea Schrader, Martin Hülskamp, Achim Tresch
Semi-automated 3D Leaf Reconstruction and Analysis of Trichome Patterning from Light Microscopic Images. PLoS Comput. Biol. 9 (4) (2013)
Theresa Niederberger, Stefanie Etzold, Michael Lidschreiber, Kerstin C. Maier, Dietmar E. Martin, Holger Fröhlich, Patrick Cramer, Achim Tresch
MC EMiNEM Maps the Interaction Landscape of the Mediator. PLoS Comput. Biol. 8 (6) (2012)
Björn Schwalb, Daniel Schulz, Mai Sun, Benedikt Zacher, Sebastian Dümcke, Dietmar E. Martin, Patrick Cramer, Achim Tresch
Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA). Bioinform. 28 (6) (2012)
Benedikt Zacher, Khalid Abnaof, Stephan Gade, Erfan Younesi, Achim Tresch, Holger Fröhlich
Joint Bayesian inference of condition-specific miRNA and transcription factor activities from combined gene and microRNA expression data. Bioinform. 28 (13) (2012)
Ramin Norousi, Stephan Wickles, Christoph Leidig, Thomas Becker, Volker J. Schmid, Roland Beckmann, Achim Tresch
Automatic post-picking using MAPPOS improves particle image detection from Cryo-EM micrographs CoRR (2012)
Julien Gagneur, Markus C. Elze, Achim Tresch
Selective Phenotyping, Entropy Reduction and the Mastermind Game. BMC Bioinform. 12 (2011)
Holger Fröhlich, Paurush Praveen, Achim Tresch
Fast and efficient dynamic nested effects models. Bioinform. 27 (2) (2011)
Ramin Norousi, Stephan Wickles, Thomas Becker, Roland Beckmann, Volker J. Schmid, Achim Tresch
Automatic post-picking improves particle image detection from Cryo-EM micrographs CoRR (2011)
Anika Jöcker, Johanna Sonntag, Frauke Henjes, Frank Götschel, Achim Tresch, Tim Beißbarth, Stefan Wiemann, Ulrike Korf
QuantProReloaded: quantitative analysis of microspot immunoassays. Bioinform. 26 (19) (2010)
Benedikt Zacher, Pei Fen Kuan, Achim Tresch
Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data. BMC Bioinform. 11 (2010)
Andreas Buness, Markus Ruschhaupt, Ruprecht Kuner, Achim Tresch
Classification across gene expression microarray studies. BMC Bioinform. 10 (2009)
Cordula Zeller, Holger Fröhlich, Achim Tresch
A Bayesian Network View on Nested Effects Models. EURASIP J. Bioinform. Syst. Biol. 2009 (2009)
Holger Fröhlich, Tim Beißbarth, Achim Tresch, Dennis Kostka, Juby Jacob, Rainer Spang, Florian Markowetz
Analyzing gene perturbation screens with nested effects models in R and bioconductor. Bioinform. 24 (21) (2008)
Achim Tresch, Tim Beißbarth, Holger Sültmann, Ruprecht Kuner, Annemarie Poustka, Andreas Buness
Discrimination of Direct and Indirect Interactions in a Network of Regulatory Effects. J. Comput. Biol. 14 (9) (2007)
Andreas Buness, Ruprecht Kuner, Markus Ruschhaupt, Annemarie Poustka, Holger Sültmann, Achim Tresch
Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer. Bioinform. 23 (17) (2007)