Pei Fen Kuan

Publication Activity (10 Years)

Years Active: 2008-2022
Publications (10 Years): 8

Top Topics

Alternative Splicing

Contingency Tables

Pairwise Constraints

Kernel Learning

Top Venues

Artif. Intell. Medicine

Briefings Bioinform.

Publications

Junyan Song, Pei Fen Kuan
A systematic assessment of cell type deconvolution algorithms for DNA methylation data. Briefings Bioinform. 23 (6) (2022)
Kaiqiao Li, Sijie Yao, Zhenyu Zhang, Biwei Cao, Christopher M. Wilson, Denise Kalos, Pei Fen Kuan, Ruoqing Zhu, Xuefeng Wang
Efficient gradient boosting for prognostic biomarker discovery. Bioinform. 38 (6) (2022)
Christopher M. Wilson, Kaiqiao Li, Qiang Sun, Pei Fen Kuan, Xuefeng Wang
Fenchel duality of Cox partial likelihood with an application in survival kernel learning. Artif. Intell. Medicine 116 (2021)
Xu Ren, Pei Fen Kuan
Negative binomial additive model for RNA-Seq data analysis. BMC Bioinform. 21 (1) (2020)
Xu Ren, Pei Fen Kuan
methylGSA: a Bioconductor package and Shiny app for DNA methylation data length bias adjustment in gene set testing. Bioinform. 35 (11) (2019)
Christopher M. Wilson, Kaiqiao Li, Xiaoqing Yu, Pei Fen Kuan, Xuefeng Wang
Multiple-kernel learning for genomic data mining and prediction. BMC Bioinform. 20 (1) (2019)
Pei Fen Kuan, Scott Powers, Shuyao He, Kaiqiao Li, Xiaoyu Zhao, Bo Huang
A systematic evaluation of nucleotide properties for CRISPR sgRNA design. BMC Bioinform. 18 (1) (2017)
Pei Fen Kuan, Junyan Song, Shuyao He
methylDMV: Simultaneous Detection of Differential DNA Methylation and Variability with Confounder Adjustment. PSB (2017)
Dongjun Chung, Pei Fen Kuan, Bo Li, Rajendran Sanalkumar, Kun Liang, Emery H. Bresnick, Colin N. Dewey, Sündüz Keles
Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data. PLoS Comput. Biol. 7 (7) (2011)
Pei Fen Kuan, Sijian Wang, Xin Zhou, Haitao Chu
A statistical framework for Illumina DNA methylation arrays. Bioinform. 26 (22) (2010)
Benedikt Zacher, Pei Fen Kuan, Achim Tresch
Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data. BMC Bioinform. 11 (2010)
Pei Fen Kuan, Hyonho Chun, Sündüz Keles
CMARRT: A Tool of Analysis of CHIP-chip Data from Tiling Arrays by Incorporating the Correlation Structure. Pacific Symposium on Biocomputing (2008)