Jean-François Gibrat

Publication Activity (10 Years)

Years Active: 1994-2018
Publications (10 Years): 8

Top Topics

Web Server Logs

Comparative Analysis

Protein Structural

Security Architecture

Top Venues

J. Comput. Biol.

Publications

Jean-François Gibrat
A short note on dynamic programming in a band. BMC Bioinform. 19 (1) (2018)
Mehdi Kchouk, Jean-François Gibrat, Mourad Elloumi
An Error Correction Algorithm for NGS Data. DEXA Workshops (2017)
Yuri Demchenko, Christophe Blanchet, Charles Loomis, Robert Branchat, Mathias Slawik, Begüm Ilke Zilci, Mohamed Bedri, Jean-François Gibrat, Oleg Lodygensky, Miroslav Zivkovic, Cees de Laat
CYCLONE: A Platform for Data Intensive Scientific Applications in Heterogeneous Multi-cloud/Multi-provider Environment. IC2E Workshops (2016)
Domenico Gallico, Matteo Biancani, Christophe Blanchet, Mohamed Bedri, Jean-François Gibrat, José-Ignacio Aznar-Baranda, D. Hacker, M. Kourkouli
CYCLONE: A Multi-cloud Federation Platform for Complex Bioinformatics and Energy Applications (Short Paper). CloudNet (2016)
Mathias Slawik, Begüm Ilke Zilci, Axel Küpper, Yuri Demchenko, Fatih Turkmen, Christophe Blanchet, Jean-François Gibrat
An Economical Security Architecture for Multi-cloud Application Deployments in Federated Environments. GECON (2016)
Vincent Henry, Arnaud Ferré, Christine Froidevaux, Anne Goelzer, Vincent Fromion, Sarah Cohen Boulakia, Sandra Dérozier, Marc Dinh, Ghislain Fiévet, Stephan Fischer, Jean-François Gibrat, Valentin Loux, Sabine Peres
Représentation systémique multi-échelle des processus biologiques de la bactérie. IC (2016)
Thomas Lacroix, Sylvie Thérond, Marc Rugeri, Pierre Nicolas, Annie Gendrault, Valentin Loux, Jean-François Gibrat
Synchronized navigation and comparative analyses across Ensembl complete bacterial genomes with INSYGHT. Bioinform. 32 (7) (2016)
Anita Burgun, Dina V. Oksen, Wolfgang Kuchinke, Hans-Ulrich Prokosch, Thomas Ganslandt, Iain E. Buchan, Tjeerd Pieter van Staa, James A. Cunningham, Marianne L. Gjerstorff, Jean-Charles Dufour, Jean-François Gibrat, Macha Nikolski, Pierre Verger, Anne Cambon-Thomsen, Cristina Masella, Emanuele Lettieri, Paolo Bertele, Marjut Salokannel, Rodolphe Thiébaut, Charles Persoz, Geneviève Chêne, Christian Ohmann
Proposal for a European Public Health Research Infrastructure for Sharing of health and Medical administrative data (PHRIMA). MedInfo (2015)
Sophie Schbath, Véronique Martin, Matthias Zytnicki, Julien Fayolle, Valentin Loux, Jean-François Gibrat
Mapping Reads on a Genomic Sequence: An Algorithmic Overview and a Practical Comparative Analysis. J. Comput. Biol. 19 (6) (2012)
Afshin Fayyaz Movaghar, Guillaume Launay, Sophie Schbath, Jean-François Gibrat, François Rodolphe
Statistical Significance of Threading Scores. J. Comput. Biol. 19 (1) (2012)
Franck Samson, Richard Shrager, Chin-Hsien Tai, Vichetra Sam, Byungkook Lee, Peter J. Munson, Jean-François Gibrat, Jean Garnier
DOMIRE: a web server for identifying structural domains and their neighbors in proteins. Bioinform. 28 (7) (2012)
Guillaume Collet, Rumen Andonov, Nicola Yanev, Jean-François Gibrat
Local protein threading by Mixed Integer Programming. Discret. Appl. Math. 159 (16) (2011)
Karel Zimmermann, Jean-François Gibrat
Amino acid "little Big Bang": Representing amino acid substitution matrices as dot products of Euclidian vectors. BMC Bioinform. 11 (2010)
Bastien Rance, Jean-François Gibrat, Christine Froidevaux
An Adaptive Combination of Matchers: Application to the Mapping of Biological Ontologies for Genome Annotation. DILS (2009)
Guillaume Collet, Rumen Andonov, Nicola Yanev, Jean-François Gibrat
Protein Threading. CTW (2009)
Jean-François Taly, Antoine Marin, Jean-François Gibrat
Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models? BMC Bioinform. 9 (2008)
Lucie Gentils, Jérôme Azé, Claire Toffano-Nioche, Valentin Loux, Anne Poupon, Jean-François Gibrat, Christine Froidevaux
Mesures Hiérarchiques pondérées pour l'évaluation d'un système semi-automatique d'annotation de génomes utilisant des arbres de décision. EGC (2008)
Vichetra Sam, Chin-Hsien Tai, Jean Garnier, Jean-François Gibrat, Byungkook Lee, Peter J. Munson
Towards an automatic classification of protein structural domains based on structural similarity. BMC Bioinform. 9 (2008)
Rumen Andonov, Guillaume Collet, Jean-François Gibrat, Antoine Marin, Vincent Poirriez, Nicola Yanev
Recent Advances in Solving the Protein Threading Problem CoRR (2007)
Vichetra Sam, Chin-Hsien Tai, Jean Garnier, Jean-François Gibrat, Byungkook Lee, Peter J. Munson
ROC and confusion analysis of structure comparison methods identify the main causes of divergence from manual protein classification. BMC Bioinform. 7 (2006)
Vincent Poirriez, Rumen Andonov, Antoine Marin, Jean-François Gibrat
FROST: Revisited and Distributed. IPDPS (2005)
Juliette Martin, Jean-François Gibrat, François Rodolphe
Choosing the Optimal Hidden Markov Model for Secondary-Structure Prediction. IEEE Intell. Syst. 20 (6) (2005)
Jean-François Gibrat, Jean Garnier, Nobuhiro Go
Normal Mode Analysis of Oligomeric Proteins: Reduction of the Memory Requirement by Consideration of Rigid Geomertry and Molecular Symmetry. J. Comput. Chem. 15 (8) (1994)