Jan Hoinka

Publication Activity (10 Years)

Years Active: 2012-2020
Publications (10 Years): 6

Top Topics

Unsupervised Clustering

Embedding Space

Structural Motifs

Top Venues

J. Comput. Biol.

Publications

Jan Hoinka, Yijie Wang, Teresa M. Przytycka
AptaBlocks Online: A Web-Based Toolkit for the In Silico Design of Oligonucleotide Sticky Bridges. J. Comput. Biol. 27 (3) (2020)
Jan Hoinka, Teresa M. Przytycka
Embedding gene sets in low-dimensional space. Nat. Mach. Intell. 2 (7) (2020)
Yijie Wang, Jan Hoinka, Teresa M. Przytycka
Accurate Sub-population Detection and Mapping Across Single Cell Experiments with PopCorn. RECOMB (2019)
Yijie Wang, Jan Hoinka, Piotr Swiderski, Teresa M. Przytycka
AptaBlocks: Accelerating the Design of RNA-Based Drug Delivery Systems. RECOMB (2018)
Phuong Dao, Jan Hoinka, Yijie Wang, Mayumi Takahashi, Jiehua Zhou, Fabrizio Costa, John Rossi, John Burnett, Rolf Backofen, Teresa M. Przytycka
AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments. RECOMB (2016)
Phuong Dao, Jan Hoinka, Yijie Wang, Mayumi Takahashi, Jiehua Zhou, Fabrizio Costa, John Rossi, John Burnett, Rolf Backofen, Teresa M. Przytycka
AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments. CoRR (2016)
Jan Hoinka, Alexey Berezhnoy, Zuben E. Sauna, Eli Gilboa, Teresa M. Przytycka
AptaCluster - A Method to Cluster HT-SELEX Aptamer Pools and Lessons from Its Application. RECOMB (2014)
Jan Hoinka, Elena Zotenko, Adam Friedman, Zuben E. Sauna, Teresa M. Przytycka
Identification of sequence-structure RNA binding motifs for SELEX-derived aptamers. Bioinform. 28 (12) (2012)