SPARSE: Quadratic Time Simultaneous Alignment and Folding of RNAs without Sequence-Based Heuristics.
Sebastian WillChristina SchmiedlMilad MiladiMathias MöhlRolf BackofenPublished in: RECOMB (2013)
Keyphrases
- rna sequences
- multiple alignment
- rna secondary structures
- sequence alignment
- secondary structure
- multiple sequence alignments
- multiple sequence alignment
- protein sequences
- protein folding
- pairwise
- sequential pattern mining
- dna sequences
- amino acid sequences
- sparse data
- free energy
- stochastic context free grammars
- objective function
- computational biology
- edit distance
- biological sequences
- high dimensional