Hamidreza Chitsaz

Publication Activity (10 Years)

Years Active: 2009-2021
Publications (10 Years): 14

Top Topics

Confidence Weighted

Top Venues

J. Comput. Biol.

Publications

Ali Ebrahimpour Boroojeny, Sanjay Rajopadhye, Hamidreza Chitsaz
BPPart: RNA-RNA Interaction Partition Function in the Absence of Entropy. WABI (2021)
Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Süleyman Cenk Sahinalp, Hamidreza Chitsaz
PyGTED: Python Application for Computing Graph Traversal Edit Distance. J. Comput. Biol. 27 (3) (2020)
Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Süleyman Cenk Sahinalp, Hamidreza Chitsaz
Graph Traversal Edit Distance and Extensions. J. Comput. Biol. 27 (3) (2020)
Majdi Khalid, Hamidreza Chitsaz, Indrakshi Ray
Proximal Stochastic AUC Maximization. IJCNN (2020)
Farzad Abdolhosseini, Behrooz Azarkhalili, Abbas Maazallahi, Aryan Kamal, Seyed Abolfazl Motahari, Ali Sharifi-Zarchi, Hamidreza Chitsaz
Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks. CoRR (2018)
Majdi Khalid, Indrakshi Ray, Hamidreza Chitsaz
Scalable Nonlinear AUC Maximization Methods. ECML/PKDD (2) (2018)
Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Süleyman Cenk Sahinalp, Hamidreza Chitsaz
GTED: Graph Traversal Edit Distance. RECOMB (2018)
Behrooz Azarkhalili, Ali Saberi, Hamidreza Chitsaz, Ali Sharifi-Zarchi
Inferring Molecular Pathology and micro-RNA Transcriptome from mRNA Profiles of Cancer Biopsies through Deep Multi-Task Learning. CoRR (2018)
Behrouz Bokharaeian, Alberto Díaz Esteban, Nasrin Taghizadeh, Hamidreza Chitsaz, Ramyar Chavoshinejad
SNPPhenA: a corpus for extracting ranked associations of single-nucleotide polymorphisms and phenotypes from literature. J. Biomed. Semant. 8 (1) (2017)
Reza Iraji, Hamidreza Chitsaz
Principal Variety Analysis. CoRL (2017)
Majdi Khalid, Indrakshi Ray, Hamidreza Chitsaz
AUC Maximization with K-hyperplane. CoRR (2017)
Majdi Khalid, Indrakshi Ray, Hamidreza Chitsaz
Confidence-Weighted Bipartite Ranking. CoRR (2016)
Majdi Khalid, Indrakshi Ray, Hamidreza Chitsaz
Confidence-Weighted Bipartite Ranking. ADMA (2016)
Nancy M. Amato, Charles W. Anderson, Gregory S. Chirikjian, Hamidreza Chitsaz, Vishnu R. Desaraju, Chinwe Ekenna, Kris K. Hauser, Geoffrey A. Hollinger, Reza Iraji, Minwoo Lee, Qianli Ma, Seth McCammon, Nathan Michael, Shawna L. Thomas, Diane Uwacu, Yan Yan
Proceedings of the 1st International Workshop on Robot Learning and Planning (RLP 2016). CoRR (2016)
Ali Sharifi-Zarchi, Mehdi Totonchi, Keynoush Khaloughi, Razieh Karamzadeh, Marcos J. Araúzo-Bravo, Hossein Baharvand, Ruzbeh Tusserkani, Hamid Pezeshk, Hamidreza Chitsaz, Mehdi Sadeghi
Increased robustness of early embryogenesis through collective decision-making by key transcription factors. BMC Syst. Biol. 9 (2015)
Hamidreza Chitsaz, Mohammad Aminisharifabad
Exact Learning of RNA Energy Parameters From Structure. J. Comput. Biol. 22 (6) (2015)
Reza Iraji, Hamidreza Chitsaz
NUROA: A numerical roadmap algorithm. CDC (2014)
Milad Gholami, Aryan Arbabi, Ali Sharifi-Zarchi, Hamidreza Chitsaz, Mehdi Sadeghi
ARYANA: Aligning Reads by Yet Another Approach. BMC Bioinform. 15 (S-9) (2014)
Hamidreza Chitsaz, Mohammad Aminisharifabad
Exact Learning of RNA Energy Parameters from Structure. RECOMB (2014)
Seyed Basir Shariat Razavi, Narjes Sadat Movahedi Tabrizi, Hamidreza Chitsaz, Christina Boucher
HyDA-Vista: Towards Optimal Guided Selection of k-mer Size for Sequence Assembly. CoRR (2014)
Reza Iraji, Hamidreza Chitsaz
NuRA: Numerical Roadmap Algorithm. CoRR (2014)
Hamidreza Chitsaz
On Time-optimal Trajectories for a Car-like Robot with One Trailer. SIAM Conf. on Control and its Applications (2013)
Zeinab Taghavi, Narjes S. Movahedi, Sorin Draghici, Hamidreza Chitsaz
Distilled Single Cell Genome Sequencing and De Novo Assembly for Sparse Microbial Communities CoRR (2013)
Elmirasadat Forouzmand, Hamidreza Chitsaz
The RNA Newton polytope and learnability of energy parameters. Bioinform. 29 (13) (2013)
Hamidreza Chitsaz
On Time-optimal Trajectories for a Car-like Robot with One Trailer CoRR (2013)
Elmirasadat Forouzmand, Hamidreza Chitsaz
The RNA Newton Polytope and Learnability of Energy Parameters CoRR (2013)
Hamidreza Chitsaz, Elmirasadat Forouzmand, Gholamreza Haffari
An Efficient Algorithm for Upper Bound on the Partition Function of Nucleic Acids. J. Comput. Biol. 20 (7) (2013)
Hamidreza Chitsaz, Elmirasadat Forouzmand, Gholamreza Haffari
An Efficient Algorithm for Upper Bound on the Partition Function of Nucleic Acids CoRR (2013)
Zeinab Taghavi, Narjes S. Movahedi, Sorin Draghici, Hamidreza Chitsaz
assembly for sparse microbial communities. Bioinform. 29 (19) (2013)
Hamidreza Chitsaz, Mohammad Aminisharifabad
Exact Learning of RNA Energy Parameters From Structure. CoRR (2013)
Narjes S. Movahedi, Elmirasadat Forouzmand, Hamidreza Chitsaz
De novo co-assembly of bacterial genomes from multiple single cells. BIBM (2012)
Roy Ronen, Christina Boucher, Hamidreza Chitsaz, Pavel A. Pevzner
SEQuel: improving the accuracy of genome assemblies. Bioinform. 28 (12) (2012)
Rolf Backofen, Hamidreza Chitsaz, Ivo L. Hofacker, Süleyman Cenk Sahinalp, Peter F. Stadler
Session Introduction. Pacific Symposium on Biocomputing (2010)
Hamidreza Chitsaz, Raheleh Salari, Süleyman Cenk Sahinalp, Rolf Backofen
A partition function algorithm for interacting nucleic acid strands. Bioinform. 25 (12) (2009)
Hamidreza Chitsaz, Rolf Backofen, Süleyman Cenk Sahinalp
biRNA: Fast RNA-RNA Binding Sites Prediction. WABI (2009)