Mehdi Sadeghi

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 15

Top Topics

Evolutionary Game

Protein Interaction

Gene Regulatory

Top Venues

J. Bioinform. Comput. Biol.

Comput. Methods Programs Biomed.

Algorithms Mol. Biol.

Publications

Seyed Amir Malekpour, Maryam Shahdoust, Rosa Aghdam, Mehdi Sadeghi
wpLogicNet: logic gate and structure inference in gene regulatory networks. Bioinform. 39 (2) (2023)
Mohammad Reza Karimi, Amir-Hossein Karimi, Shamsozoha Abolmaali, Mehdi Sadeghi, Ulf Schmitz
Prospects and challenges of cancer systems medicine: from genes to disease networks. Briefings Bioinform. 23 (1) (2022)
Ramazan Teimouri Yansari, Mitra Mirzarezaee, Mehdi Sadeghi, Babak Nadjar Araabi
A new survival analysis model in adjuvant Tamoxifen-treated breast cancer patients using manifold-based semi-supervised learning. J. Comput. Sci. 61 (2022)
Rouhollah Maghsoudi, Mitra Mirzarezaee, Mehdi Sadeghi, Babak Nadjar Araabi
Determining the adjusted initial treatment dose of warfarin anticoagulant medicine using kernel-based support vector regression. Comput. Methods Programs Biomed. 214 (2022)
Sara Salmanian, Hamid Pezeshk, Mehdi Sadeghi
Inter-protein residue covariation information unravels physically interacting protein dimers. BMC Bioinform. 21 (1) (2020)
Seyed Amir Malekpour, Amir Reza Alizad-Rahvar, Mehdi Sadeghi
LogicNet: probabilistic continuous logics in reconstructing gene regulatory networks. BMC Bioinform. 21 (1) (2020)
Maryam S. Daneshpour, Hossein Mahjub, Hamid Pezeshk, Mehdi Sadeghi
A Network-Based Comparison Between Molecular Apocrine Breast Cancer Tumor and Basal and Luminal Tumors by Joint Graphical Lasso. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (5) (2020)
Joan Adler, Sampo Kulju, Jari Hyväluoma, Keijo Mattila, Kit Choi, Ioannis Tziakos, Didrik Pinte, G. A. García, Y. Makushok, V. Makushok, J. Lama, G. Román-Pérez, Adham Hashibon, Mehdi Sadeghi, Nathan Franklin, Amihai Silverman
Visualization in the integrated SimPhoNy multiscale simulation framework. Comput. Phys. Commun. 231 (2018)
Farzaneh Salari, Fatemeh Zare-Mirakabad, Mehdi Sadeghi, Hassan Rokni-Zadeh
Assessing the impact of exact reads on reducing the error rate of read mapping. BMC Bioinform. 19 (1) (2018)
Seyed Amir Malekpour, Parsa Pakzad, Mohammad-Hadi Foroughmand-Araabi, Sama Goliaei, Ruzbeh Tusserkani, Bahram Goliaei, Mehdi Sadeghi
Modeling the probability distribution of the bacterial burst size via a game-theoretic approach. J. Bioinform. Comput. Biol. 16 (4) (2018)
Fereshteh Chitsazian, Mehdi Sadeghi, Elahe Elahi
Confident gene activity prediction based on single histone modification H2BK5ac in human cell lines. BMC Bioinform. 18 (1) (2017)
Bahareh Khazaei, Javad Salimi Sartakhti, Mohammad Hossein Manshaei, Quanyan Zhu, Mehdi Sadeghi, Seyed Rasoul Mousavi
HIV-1-infected T-cells dynamics and prognosis: An evolutionary game model. Comput. Methods Programs Biomed. 152 (2017)
Seyed Amir Malekpour, Hamid Pezeshk, Mehdi Sadeghi
PSE-HMM: genome-wide CNV detection from NGS data using an HMM with Position-Specific Emission probabilities. BMC Bioinform. 18 (1) (2017)
Naghmeh Pakdel-Lahiji, Morteza Bastami, Mehdi Sadeghi
Seismic vulnerability assessment and risk modelling of telecommunication systems. Int. J. Crit. Infrastructures 12 (4) (2016)
Maryam Pourkamali Anaraki, Mehdi Sadeghi
Honey bee-inspired algorithms for SNP haplotype reconstruction problem. J. Exp. Theor. Artif. Intell. 28 (1-2) (2016)
Mohammad-Hadi Foroughmand-Araabi, Bahram Goliaei, Kasra Alishahi, Mehdi Sadeghi, Sama Goliaei
Codon usage and protein sequence pattern dependency in different organisms: A Bioinformatics approach. J. Bioinform. Comput. Biol. 13 (2) (2015)
Pegah Khosravi, Vahid H. Gazestani, Leila Pirhaji, Brian Law, Mehdi Sadeghi, Bahram Goliaei, Gary D. Bader
Inferring interaction type in gene regulatory networks using co-expression data. Algorithms Mol. Biol. 10 (2015)
Mohieddin Jafari, Mehdi Mirzaie, Mehdi Sadeghi
Interlog protein network: an evolutionary benchmark of protein interaction networks for the evaluation of clustering algorithms. BMC Bioinform. 16 (2015)
Ali Sharifi-Zarchi, Mehdi Totonchi, Keynoush Khaloughi, Razieh Karamzadeh, Marcos J. Araúzo-Bravo, Hossein Baharvand, Ruzbeh Tusserkani, Hamid Pezeshk, Hamidreza Chitsaz, Mehdi Sadeghi
Increased robustness of early embryogenesis through collective decision-making by key transcription factors. BMC Syst. Biol. 9 (2015)
Pegah Khosravi, Vahid H. Gazestani, Leila Pirhaji, Brian Law, Mehdi Sadeghi, Gary D. Bader, Bahram Goliaei
Erratum to: Inferring interaction type in gene regulatory networks using co-expression data. Algorithms Mol. Biol. 10 (2015)
Milad Gholami, Aryan Arbabi, Ali Sharifi-Zarchi, Hamidreza Chitsaz, Mehdi Sadeghi
ARYANA: Aligning Reads by Yet Another Approach. BMC Bioinform. 15 (S-9) (2014)
Mehdi Sadeghi, Keivan Maghooli, Mohammad Shahram Moein
Using artificial immunity network for face verification. Int. Arab J. Inf. Technol. 11 (4) (2014)
Mahdi Heydari, Sayed-Amir Marashi, Ruzbeh Tusserkani, Mehdi Sadeghi
Reconstruction of phylogenetic trees of prokaryotes using maximal common intervals. Biosyst. 124 (2014)
Alireza Vazifedoost, Maseud Rahgozar, Behzad Moshiri, Mehdi Sadeghi, Hon Nian Chua, See-Kiong Ng, Limsoon Wong
Using data fusion for scoring reliability of protein-protein interactions. J. Bioinform. Comput. Biol. 12 (4) (2014)
Pegah Khosravi, Vahid H. Gazestani, Yazdan Asgari, Brian Law, Mehdi Sadeghi, Bahram Goliaei
Network-based approach reveals Y chromosome influences prostate cancer susceptibility. Comput. Biol. Medicine 54 (2014)
Mahdi Pakdaman Naeini, Behzad Moshiri, Babak Nadjar Araabi, Mehdi Sadeghi
Learning by abstraction: Hierarchical classification model using evidential theoretic approach and Bayesian ensemble model. Neurocomputing 130 (2014)
Maryam Pourkamali Anaraki, Mehdi Sadeghi
Efficient fast heuristic algorithms for minimum error correction haplotyping from SNP fragments. Int. J. Comput. Biol. Drug Des. 7 (4) (2014)
Mehdi Sadeghi, Hossein Mirshojaeian Hosseini
Evaluation of Fuzzy Linear Programming Application in Energy Models. Int. J. Energy Optim. Eng. 2 (1) (2013)
Alireza Meshkin, Nasser Ghasem-Aghaee, Mehdi Sadeghi
Modeling and implementing an agent-based system for prediction of protein relative solvent accessibility. Expert Syst. Appl. 38 (5) (2011)
Kaveh Kavousi, Behzad Moshiri, Mehdi Sadeghi, Babak Nadjar Araabi, Ali Akbar Moosavi-Movahedi
A protein fold classifier formed by fusing different modes of pseudo amino acid composition via PSSM. Comput. Biol. Chem. 35 (1) (2011)
Shahriar Arab, Mehdi Sadeghi, Changiz Eslahchi, Hamid Pezeshk, Armita Sheari
A pairwise residue contact area-based mean force potential for discrimination of native protein structure. BMC Bioinform. 11 (2010)
Ghasem Mahdevar, Javad Zahiri, Mehdi Sadeghi, Abbas Nowzari-Dalini, Hayedeh Ahrabian
Tag SNP selection via a genetic algorithm. J. Biomed. Informatics 43 (5) (2010)
Mitra Mirzarezaee, Babak Nadjar Araabi, Mehdi Sadeghi
Features analysis for identification of date and party hubs in protein interaction network of Saccharomyces Cerevisiae. BMC Syst. Biol. 4 (2010)
Ali Katanforoush, Mehdi Sadeghi, Hamid Pezeshk, Elahe Elahi
Global haplotype partitioning for maximal associated SNP pairs. BMC Bioinform. 10 (2009)
Fatemeh Zare-Mirakabad, Hayedeh Ahrabian, Mehdi Sadeghi, Abbas Nowzari-Dalini, Bahram Goliaei
New scoring schema for finding motifs in DNA Sequences. BMC Bioinform. 10 (2009)
Changiz Eslahchi, Hamid Pezeshk, Mehdi Sadeghi, Amir Massoud Rahimi, Heydar Maboudi Afkham, Shahriar Arab
STON: A novel method for protein three-dimensional structure comparison. Comput. Biol. Medicine 39 (2) (2009)
M-Hossein Moeinzadeh, Ehsan Asgarian, Morteza Mohammad Noori, Mehdi Sadeghi, Sara Sharifian-R
F.C.A: Designing a fuzzy clustering algorithm for haplotype assembly. FUZZ-IEEE (2009)
Sayed-Rzgar Hosseini, Mehdi Sadeghi, Hamid Pezeshk, Changiz Eslahchi, Mahnaz Habibi
atoms. Comput. Biol. Chem. 32 (6) (2008)
Amir Momen-Roknabadi, Mehdi Sadeghi, Hamid Pezeshk, Sayed-Amir Marashi
Impact of residue accessible surface area on the prediction of protein secondary structures. BMC Bioinform. 9 (2008)
Armita Sheari, Mehdi Kargar, Ali Katanforoush, Shahriar Arab, Mehdi Sadeghi, Hamid Pezeshk, Changiz Eslahchi, Sayed-Amir Marashi
A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins. BMC Bioinform. 9 (2008)
Roghayeh Zarei, Shahriar Arab, Mehdi Sadeghi
A method for protein accessibility prediction based on residue types and conformational states. Comput. Biol. Chem. 31 (5-6) (2007)
Sayed-Amir Marashi, Hani Goodarzi, Mehdi Sadeghi, Changiz Eslahchi, Hamid Pezeshk
Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks. Comput. Biol. Chem. 30 (1) (2006)
Sayed-Amir Marashi, Changiz Eslahchi, Hamid Pezeshk, Mehdi Sadeghi
Impact of RNA structure on the prediction of donor and acceptor splice sites. BMC Bioinform. 7 (2006)