Sayed-Amir Marashi

Publication Activity (10 Years)

Years Active: 2006-2021
Publications (10 Years): 9

Top Topics

Clustering Coefficient

Biological Networks

Metabolic Networks

Regulatory Networks

Top Venues

Comput. Biol. Medicine

Comput. Biol. Chem.

J. Bioinform. Comput. Biol.

Publications

Javad Rezaei, Fatemeh Zare-Mirakabad, Seyyed Ali MirHassani, Sayed-Amir Marashi
EIA-CNDP: An exact iterative algorithm for critical node detection problem. Comput. Oper. Res. 127 (2021)
Soheila Shabani-Mashcool, Sayed-Amir Marashi, Sajjad Gharaghani
NDDSA: A network- and domain-based method for predicting drug-side effect associations. Inf. Process. Manag. 57 (6) (2020)
Mona Arabzadeh, Mehdi Sedighi, Morteza Saheb Zamani, Sayed-Amir Marashi
A system architecture for parallel analysis of flux-balanced metabolic pathways. Comput. Biol. Chem. 88 (2020)
Majid Rahimi, Babak Teimourpour, Sayed-Amir Marashi
Cancer driver gene discovery in transcriptional regulatory networks using influence maximization approach. Comput. Biol. Medicine 114 (2019)
Mona Arabzadeh, Morteza Saheb Zamani, Mehdi Sedighi, Sayed-Amir Marashi
A graph-based approach to analyze flux-balanced pathways in metabolic networks. Biosyst. 165 (2018)
Hamideh Fouladiha, Sayed-Amir Marashi
Biomedical applications of cell- and tissue-specific metabolic network models. J. Biomed. Informatics 68 (2017)
Amir lakizadeh, Saeed Jalili, Sayed-Amir Marashi
CAMWI: Detecting protein complexes using weighted clustering coefficient and weighted density. Comput. Biol. Chem. 58 (2015)
Sayed-Amir Marashi, Zhaleh Hosseini
On correlated reaction sets and coupled reaction sets in metabolic networks. J. Bioinform. Comput. Biol. 13 (4) (2015)
Mehdi Ahmadi, Rahim Jafari, Sayed-Amir Marashi, Ali Farazmand
Evidence for the relationship between the regulatory effects of microRNAs and attack robustness of biological networks. Comput. Biol. Medicine 63 (2015)
Mahdi Heydari, Sayed-Amir Marashi, Ruzbeh Tusserkani, Mehdi Sadeghi
Reconstruction of phylogenetic trees of prokaryotes using maximal common intervals. Biosyst. 124 (2014)
Abolfazl Rezvan, Sayed-Amir Marashi, Changiz Eslahchi
FCDECOMP: Decomposition of metabolic networks based on flux coupling relations. J. Bioinform. Comput. Biol. 12 (5) (2014)
Sayed-Amir Marashi, László Dávid, Alexander Bockmayr
Analysis of Metabolic Subnetworks by Flux Cone Projection. Algorithms Mol. Biol. 7 (2012)
László Dávid, Sayed-Amir Marashi, Abdelhalim Larhlimi, Bettina Mieth, Alexander Bockmayr
FFCA: a feasibility-based method for flux coupling analysis of metabolic networks. BMC Bioinform. 12 (2011)
Sayed-Amir Marashi, Alexander Bockmayr
Flux coupling analysis of metabolic networks is sensitive to missing reactions. Biosyst. 103 (1) (2011)
Amir Momen-Roknabadi, Mehdi Sadeghi, Hamid Pezeshk, Sayed-Amir Marashi
Impact of residue accessible surface area on the prediction of protein secondary structures. BMC Bioinform. 9 (2008)
Armita Sheari, Mehdi Kargar, Ali Katanforoush, Shahriar Arab, Mehdi Sadeghi, Hamid Pezeshk, Changiz Eslahchi, Sayed-Amir Marashi
A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins. BMC Bioinform. 9 (2008)
Sayed-Amir Marashi, Hani Goodarzi, Mehdi Sadeghi, Changiz Eslahchi, Hamid Pezeshk
Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks. Comput. Biol. Chem. 30 (1) (2006)
Sayed-Amir Marashi, Changiz Eslahchi, Hamid Pezeshk, Mehdi Sadeghi
Impact of RNA structure on the prediction of donor and acceptor splice sites. BMC Bioinform. 7 (2006)