Ali Sharifi-Zarchi

Publication Activity (10 Years)

Years Active: 2014-2023
Publications (10 Years): 10

Top Topics

Distance Function

String Matching

Subgraph Isomorphism

Top Venues

J. Comput. Biol.

Publications

Amirhossein Askari-Farsangi, Ali Sharifi-Zarchi, Mohammad Hossein Rohban
Novel Pipeline for Diagnosing Acute Lymphoblastic Leukemia Sensitive to Related Biomarkers. CoRR (2023)
Zaynab Mousavian, Mehran Khodabandeh, Ali Sharifi-Zarchi, Alireza Nadafian, Alireza Mahmoudi
StrongestPath: a Cytoscape application for protein-protein interaction analysis. BMC Bioinform. 22 (1) (2021)
Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Süleyman Cenk Sahinalp, Hamidreza Chitsaz
PyGTED: Python Application for Computing Graph Traversal Edit Distance. J. Comput. Biol. 27 (3) (2020)
Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Süleyman Cenk Sahinalp, Hamidreza Chitsaz
Graph Traversal Edit Distance and Extensions. J. Comput. Biol. 27 (3) (2020)
Hosein Fooladi, Parsa Moradi, Ali Sharifi-Zarchi, Babak Hossein Khalaj
Enhanced Waddington landscape model with cell-cell communication can explain molecular mechanisms of self-organization. Bioinform. 35 (20) (2019)
Mahroo Moridi, Marzieh Ghadirinia, Ali Sharifi-Zarchi, Fatemeh Zare-Mirakabad
The assessment of efficient representation of drug features using deep learning for drug repositioning. BMC Bioinform. 20 (1) (2019)
Farzad Abdolhosseini, Behrooz Azarkhalili, Abbas Maazallahi, Aryan Kamal, Seyed Abolfazl Motahari, Ali Sharifi-Zarchi, Hamidreza Chitsaz
Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks. CoRR (2018)
Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Süleyman Cenk Sahinalp, Hamidreza Chitsaz
GTED: Graph Traversal Edit Distance. RECOMB (2018)
Behrooz Azarkhalili, Ali Saberi, Hamidreza Chitsaz, Ali Sharifi-Zarchi
Inferring Molecular Pathology and micro-RNA Transcriptome from mRNA Profiles of Cancer Biopsies through Deep Multi-Task Learning. CoRR (2018)
Ali Sharifi-Zarchi, Mehdi Totonchi, Keynoush Khaloughi, Razieh Karamzadeh, Marcos J. Araúzo-Bravo, Hossein Baharvand, Ruzbeh Tusserkani, Hamid Pezeshk, Hamidreza Chitsaz, Mehdi Sadeghi
Increased robustness of early embryogenesis through collective decision-making by key transcription factors. BMC Syst. Biol. 9 (2015)
Milad Gholami, Aryan Arbabi, Ali Sharifi-Zarchi, Hamidreza Chitsaz, Mehdi Sadeghi
ARYANA: Aligning Reads by Yet Another Approach. BMC Bioinform. 15 (S-9) (2014)