Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions.
Stefan E. SeemannAndreas S. RichterJan GorodkinRolf BackofenPublished in: Algorithms Mol. Biol. (2010)
Keyphrases
- rna structures
- multiple sequence alignments
- rna secondary structure prediction
- protein sequences
- multiple alignment
- rna secondary structures
- pairwise
- secondary structure
- protein structure prediction
- multiple sequence alignment
- long range
- protein protein interactions
- phylogenetic trees
- genome wide
- protein folding
- neural network
- similarity measure
- genetic algorithm
- rna sequences
- sequential pattern mining
- dynamic programming