Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%.
Jakob Hull HavgaardRune B. LyngsøGary D. StormoJan GorodkinPublished in: Bioinform. (2005)
Keyphrases
- rna sequences
- sequence similarity
- secondary structure
- pairwise
- computational methods
- protein sequences
- rna secondary structure prediction
- protein structure
- rna secondary structures
- structural features
- protein folding
- sequence alignment
- amino acids
- protein structure prediction
- higher order
- neural network
- similarity measure
- information extraction
- free energy
- computational biology
- semi supervised
- machine learning
- markov random field
- statistical significance
- genome sequences
- dna sequences
- graph matching