Rune B. Lyngsø

Publication Activity (10 Years)

Years Active: 1998-2021
Publications (10 Years): 1

Top Topics

Equivalence Class

Reinforcement Learning

Directed Acyclic Graph

Rna Secondary Structure Prediction

Top Venues

Publications

Anastasia Ignatieva, Rune B. Lyngsø, Paul A. Jenkins, Jotun Hein
KwARG: parsimonious reconstruction of ancestral recombination graphs with recurrent mutation. Bioinform. 37 (19) (2021)
Joseph L. Herman, Ádám Novák, Rune B. Lyngsø, Adrienn Szabó, István Miklós, Jotun Hein
Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs. BMC Bioinform. 16 (2015)
James W. J. Anderson, Pierre A. Haas, Leigh-Anne Mathieson, Vladimir Volynkin, Rune B. Lyngsø, Paula Tataru, Jotun Hein
Oxfold: kinetic folding of RNA using stochastic context-free grammars and evolutionary information. Bioinform. 29 (6) (2013)
Luke Cartey, Rune B. Lyngsø, Oege de Moor
Synthesising graphics card programs from DSLs. PLDI (2012)
Rune B. Lyngsø, James W. J. Anderson, Elena Sizikova, Amarendra Badugu, Tomas Hyland, Jotun Hein
Frnakenstein: multiple target inverse RNA folding. BMC Bioinform. 13 (2012)
James W. J. Anderson, Paula Tataru, Joe Staines, Jotun Hein, Rune B. Lyngsø
Evolving stochastic context-free grammars for RNA secondary structure prediction. BMC Bioinform. 13 (2012)
Márton Münz, Rune B. Lyngsø, Jotun Hein, Philip C. Biggin
Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity. BMC Bioinform. 11 (2010)
Rune B. Lyngsø, Yun S. Song, Jotun Hein
Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony. RECOMB (2008)
Ádám Novák, István Miklós, Rune B. Lyngsø, Jotun Hein
StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees. Bioinform. 24 (20) (2008)
Yun S. Song, Rune B. Lyngsø, Jotun Hein
Counting All Possible Ancestral Configurations of Sample Sequences in Population Genetics. IEEE ACM Trans. Comput. Biol. Bioinform. 3 (3) (2006)
Paul A. Jenkins, Rune B. Lyngsø, Jotun Hein
How Many Transcripts Does It Take to Reconstruct the Splice Graph? WABI (2006)
Jakob Hull Havgaard, Rune B. Lyngsø, Gary D. Stormo, Jan Gorodkin
Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%. Bioinform. 21 (9) (2005)
Jakob Hull Havgaard, Rune B. Lyngsø, Jan Gorodkin
The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Rune B. Lyngsø, Yun S. Song, Jotun Hein
Minimum Recombination Histories by Branch and Bound. WABI (2005)
Rune B. Lyngsø
Complexity of Pseudoknot Prediction in Simple Models. ICALP (2004)
Gerth Stølting Brodal, Rune B. Lyngsø, Anna Östlin, Christian N. S. Pedersen
Solving the String Statistics Problem in Time O(n log n). ICALP (2002)
Rune B. Lyngsø, Christian N. S. Pedersen
The consensus string problem and the complexity of comparing hidden Markov models. J. Comput. Syst. Sci. 65 (3) (2002)
Arun K. Jagota, Rune B. Lyngsø, Christian N. S. Pedersen
Comparing a Hidden Markov Model and a Stochastic Context-Free Grammar. WABI (2001)
Rune B. Lyngsø, Christian N. S. Pedersen
Complexity of Comparing Hidden Markov Models. ISAAC (2001)
Rune B. Lyngsø, Christian N. S. Pedersen
RNA Pseudoknot Prediction in Energy-Based Models. J. Comput. Biol. 7 (3-4) (2000)
Rune B. Lyngsø, Christian N. S. Pedersen
Pseudoknots in RNA secondary structures. RECOMB (2000)
Rune B. Lyngsø, Michael Zuker, Christian N. S. Pedersen
Fast evaluation of internal loops in RNA secondary structure prediction. Bioinform. 15 (6) (1999)
Rune B. Lyngsø, Michael Zuker, Christian N. S. Pedersen
Internal loops in RNA secondary structure prediction. RECOMB (1999)
Gerth Stølting Brodal, Rune B. Lyngsø, Christian N. S. Pedersen, Jens Stoye
Finding Maximal Pairs with Bounded Gap. CPM (1999)
Rune B. Lyngsø, Christian N. S. Pedersen, Henrik Nielsen
Metrics and Similarity Measures for Hidden Markov Models. ISMB (1999)
Christian N. S. Pedersen, Rune B. Lyngsø, Jotun Hein
Comparison of Coding DNA. CPM (1998)