Christian N. S. Pedersen

Publication Activity (10 Years)

Years Active: 1998-2018
Publications (10 Years): 4

Top Topics

Efficient Algorithms For Computing

Rna Secondary Structure Prediction

Top Venues

J. Integr. Bioinform.

Publications

Maria Luisa Matey-Hernandez, Lasse Maretty, Jacob Malte Jensen, Bent Petersen, Jonas Andreas Sibbesen, Siyang Liu, Palle Villesen, Laurits Skov, Kirstine Belling, Christian Theil Have, José M. G. Izarzugaza, Marie Grosjean, Jette Bork-Jensen, Jakob Grove, Thomas D. Als, Shujia Huang, Yuqi Chang, Ruiqi Xu, Weijian Ye, Junhua Rao, Xiaosen Guo, Jihua Sun, Hongzhi Cao, Chen Ye, John van Beusekom, Thomas Espeseth, Esben N. Flindt, Rune M. Friborg, Anders E. Halager, Stephanie Le Hellard, Christina M. Hultman, Francesco Lescai, Shengting Li, Ole Lund, Peter Løngreen, Thomas Mailund, Ole Mors, Christian N. S. Pedersen, Thomas Sicheritz-Pontén, Patrick F. Sullivan, Ali Syed, David Westergaard, Rachita Yadav, Ning Li, Xun Xu, Torben Hansen, Anders Krogh, Lars Bolund, Thorkild I. A. Sørensen, Oluf Pedersen, Ramneek Gupta, Simon Rasmussen, Søren Besenbacher, Anders D. Børglum, Jun Wang, Hans Eiberg, Karsten Kristiansen, Mikkel Heide Schierup, Søren Brunak
Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios. BMC Bioinform. 19 (1) (2018)
Lasse Maretty, Jacob Malte Jensen, Bent Petersen, Jonas Andreas Sibbesen, Siyang Liu, Palle Villesen, Laurits Skov, Kirstine Belling, Christian Theil Have, José M. G. Izarzugaza, Marie Grosjean, Jette Bork-Jensen, Jakob Grove, Thomas D. Als, Shujia Huang, Yuqi Chang, Ruiqi Xu, Weijian Ye, Junhua Rao, Xiaosen Guo, Jihua Sun, Hongzhi Cao, Chen Ye, John van Beusekom, Thomas Espeseth, Esben N. Flindt, Rune M. Friborg, Anders E. Halager, Stephanie Le Hellard, Christina M. Hultman, Francesco Lescai, Shengting Li, Ole Lund, Peter Løngreen, Thomas Mailund, Maria Luisa Matey-Hernandez, Ole Mors, Christian N. S. Pedersen, Thomas Sicheritz-Pontén, Patrick F. Sullivan, Ali Syed, David Westergaard, Rachita Yadav, Ning Li, Xun Xu, Torben Hansen, Anders Krogh, Lars Bolund, Thorkild I. A. Sørensen, Oluf Pedersen, Ramneek Gupta, Simon Rasmussen, Søren Besenbacher, Anders D. Børglum, Jun Wang, Hans Eiberg, Karsten Kristiansen, Søren Brunak, Mikkel Heide Schierup
assembly of 150 genomes from Denmark as a population reference. Nat. 548 (7665) (2017)
Dan Søndergaard, Svend V. Nielsen, Christian N. S. Pedersen, Søren Besenbacher
Prediction of Primary Tumors in Cancers of Unknown Primary. J. Integr. Bioinform. 14 (2) (2017)
Michael Knudsen, Dan Søndergaard, Claus Tofting-Olesen, Frederik T. Hansen, Ditlev Egeskov Brodersen, Christian N. S. Pedersen
Computational discovery of specificity-conferring sites in non-ribosomal peptide synthetases. Bioinform. 32 (3) (2016)
Andreas Sand, Morten Kragelund Holt, Jens Johansen, Gerth Stølting Brodal, Thomas Mailund, Christian N. S. Pedersen
tqDist: a library for computing the quartet and triplet distances between binary or general trees. Bioinform. 30 (14) (2014)
Andreas Sand, Gerth Stølting Brodal, Rolf Fagerberg, Christian N. S. Pedersen, Thomas Mailund
n) time algorithm for computing the triplet distance on binary trees. BMC Bioinform. 14 (S-2) (2013)
Andreas Sand, Martin Kristiansen, Christian N. S. Pedersen, Thomas Mailund
zipHMMlib: a highly optimised HMM library exploiting repetitions in the input to speed up the forward algorithm. BMC Bioinform. 14 (2013)
Gerth Stølting Brodal, Rolf Fagerberg, Thomas Mailund, Christian N. S. Pedersen, Andreas Sand
Efficient algorithms for computing the triplet and quartet distance between trees of arbitrary degree. SODA (2013)
Zsuzsanna Sükösd, Bjarne Knudsen, James W. J. Anderson, Ádám Novák, Jørgen Kjems, Christian N. S. Pedersen
Characterising RNA secondary structure space using information entropy. BMC Bioinform. 14 (S-2) (2013)
Zsuzsanna Sükösd, Bjarne Knudsen, Jørgen Kjems, Christian N. S. Pedersen
PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data. Bioinform. 28 (20) (2012)
Vikas Gupta, Katharina Markmann, Christian N. S. Pedersen, Jens Stougaard, Stig U. Andersen
: a pipeline for small RNA-seq data analysis. Bioinform. 28 (20) (2012)
Rolf Hilker, Corinna Sickinger, Christian N. S. Pedersen, Jens Stoye
UniMoG - a unifying framework for genomic distance calculation and sorting based on DCJ. Bioinform. 28 (19) (2012)
Jesper Buus Nielsen, Anders K. Kristensen, Thomas Mailund, Christian N. S. Pedersen
A sub-cubic time algorithm for computing the quartet distance between two general trees. Algorithms Mol. Biol. 6 (2011)
Martin Simonsen, Christian N. S. Pedersen
Rapid computation of distance estimators from nucleotide and amino acid alignments. SAC (2011)
Martin Simonsen, Christian N. S. Pedersen, Mikael H. Christensen, René Thomsen
GPU-accelerated high-accuracy molecular docking using guided differential evolution: real world applications. GECCO (2011)
Mette Alstrup Lie, René Thomsen, Christian N. S. Pedersen, Birgit Schiøtt, Mikael H. Christensen
Molecular Docking with Ligand Attached Water Molecules. J. Chem. Inf. Model. 51 (4) (2011)
Thomas Greve Kristensen, Jesper Buus Nielsen, Christian N. S. Pedersen
Using Inverted Indices for Accelerating LINGO Calculations. J. Chem. Inf. Model. 51 (3) (2011)
Thomas Greve Kristensen, Christian N. S. Pedersen
Data Structures for Accelerating Tanimoto Queries on Real Valued Vectors. WABI (2010)
Martin Simonsen, Thomas Mailund, Christian N. S. Pedersen
Inference of Large Phylogenies Using Neighbour-Joining. BIOSTEC (Selected Papers) (2010)
Martin Simonsen, Thomas Mailund, Christian N. S. Pedersen
Building Very Large Neighbour-joining Trees. BIOINFORMATICS (2010)
Thomas Greve Kristensen, Jesper Buus Nielsen, Christian N. S. Pedersen
A tree-based method for the rapid screening of chemical fingerprints. Algorithms Mol. Biol. 5 (2010)
Thomas Greve Kristensen, Jesper Buus Nielsen, Christian N. S. Pedersen
A Tree Based Method for the Rapid Screening of Chemical Fingerprints. WABI (2009)
Thomas Greve Kristensen, Christian N. S. Pedersen
Optimal Overlay of Ligands with Flexible Bonds Using Differential Evolution. IJCBS (2009)
Thomas Mailund, Jesper Buus Nielsen, Christian N. S. Pedersen
A Quadratic Time Algorithm for Computing the Quartet Distance between Two General Trees. IJCBS (2009)
Søren Besenbacher, Christian N. S. Pedersen, Thomas Mailund
A fast algorithm for genome-wide haplotype pattern mining. BMC Bioinform. 10 (S-1) (2009)
Martin Stig Stissing, Thomas Mailund, Christian N. S. Pedersen, Gerth Stølting Brodal, Rolf Fagerberg
Computing the All-Pairs Quartet Distance on a Set of Evolutionary Trees. J. Bioinform. Comput. Biol. 6 (1) (2008)
Martin Simonsen, Thomas Mailund, Christian N. S. Pedersen
Rapid Neighbour-Joining. WABI (2008)
Martin Stig Stissing, Thomas Mailund, Christian N. S. Pedersen, Gerth Stølting Brodal, Rolf Fagerberg
Computing the All-Pairs Quartet Distance on a Set of Evolutionary Trees. APBC (2007)
Thomas Mailund, Christian N. S. Pedersen, Jonas Bardino, Brian Vinter, Henrik Hoey Karlsen
Experiences with GeneRecon on MiG. Future Gener. Comput. Syst. 23 (4) (2007)
Martin Stig Stissing, Christian N. S. Pedersen, Thomas Mailund, Gerth Stølting Brodal, Rolf Fagerberg
Computing the Quartet Distance Between Evolutionary Trees of Bounded Degree. APBC (2007)
Chris Christiansen, Thomas Mailund, Christian N. S. Pedersen, Martin Randers, Martin Stig Stissing
Fast calculation of the quartet distance between trees of arbitrary degrees. Algorithms Mol. Biol. 1 (2006)
Thomas Mailund, Gerth Stølting Brodal, Rolf Fagerberg, Christian N. S. Pedersen, Derek Phillips
Recrafting the neighbor-joining method. BMC Bioinform. 7 (2006)
Thomas Mailund, Mikkel H. Schierup, Christian N. S. Pedersen, Jesper N. Madsen, Jotun Hein, Leif Schauser
GeneRecon - a coalescent based tool for fine-scale association mapping. Bioinform. 22 (18) (2006)
Søren Besenbacher, Thomas Mailund, Lasse Westh-Nielsen, Christian N. S. Pedersen
RBT - a tool for building refined Buneman trees. Bioinform. 21 (8) (2005)
Thomas Mailund, Christian N. S. Pedersen, Jonas Bardino, Brian Vinter, Henrik Hoey Karlsen
Initial Experiences with GeneRecon on MiG. GCA (2005)
Thomas Mailund, Mikkel H. Schierup, Christian N. S. Pedersen, Peter J. M. Mechlenborg, Jesper N. Madsen, Leif Schauser
CoaSim: A flexible environment for simulating genetic data under coalescent models. BMC Bioinform. 6 (2005)
Chris Christiansen, Thomas Mailund, Christian N. S. Pedersen, Martin Randers
Computing the Quartet Distance Between Trees of Arbitrary Degree. WABI (2005)
Thomas Mailund, Christian N. S. Pedersen
QDist-quartet distance between evolutionary trees. Bioinform. 20 (10) (2004)
Thomas Mailund, Christian N. S. Pedersen
QuickJoin - fast neighbour-joining tree reconstruction. Bioinform. 20 (17) (2004)
Gerth Stølting Brodal, Rolf Fagerberg, Christian N. S. Pedersen
Computing the Quartet Distance between Evolutionary Trees in Time O(n log n). Algorithmica 38 (2) (2004)
Gerth Stølting Brodal, Rolf Fagerberg, Anna Östlin, Christian N. S. Pedersen, S. Srinivasa Rao
Computing Refined Buneman Trees in Cubic Time. WABI (2003)
Gerth Stølting Brodal, Rune B. Lyngsø, Anna Östlin, Christian N. S. Pedersen
Solving the String Statistics Problem in Time O(n log n). ICALP (2002)
Christian N. S. Pedersen, Tejs Scharling
Comparative Methods for Gene Structure Prediction in Homologous Sequences. WABI (2002)
Rune B. Lyngsø, Christian N. S. Pedersen
The consensus string problem and the complexity of comparing hidden Markov models. J. Comput. Syst. Sci. 65 (3) (2002)
Gerth Stølting Brodal, Rolf Fagerberg, Christian N. S. Pedersen, Anna Östlin
The Complexity of Constructing Evolutionary Trees Using Experiments. ICALP (2001)
Arun K. Jagota, Rune B. Lyngsø, Christian N. S. Pedersen
Comparing a Hidden Markov Model and a Stochastic Context-Free Grammar. WABI (2001)
Gerth Stølting Brodal, Rolf Fagerberg, Christian N. S. Pedersen
n). ISAAC (2001)
Rune B. Lyngsø, Christian N. S. Pedersen
Complexity of Comparing Hidden Markov Models. ISAAC (2001)
Rune B. Lyngsø, Christian N. S. Pedersen
RNA Pseudoknot Prediction in Energy-Based Models. J. Comput. Biol. 7 (3-4) (2000)
Gerth Stølting Brodal, Christian N. S. Pedersen
Finding Maximal Quasiperiodicities in Strings. CPM (2000)
Rune B. Lyngsø, Christian N. S. Pedersen
Pseudoknots in RNA secondary structures. RECOMB (2000)
Rune B. Lyngsø, Michael Zuker, Christian N. S. Pedersen
Fast evaluation of internal loops in RNA secondary structure prediction. Bioinform. 15 (6) (1999)
Rune B. Lyngsø, Michael Zuker, Christian N. S. Pedersen
Internal loops in RNA secondary structure prediction. RECOMB (1999)
Gerth Stølting Brodal, Rune B. Lyngsø, Christian N. S. Pedersen, Jens Stoye
Finding Maximal Pairs with Bounded Gap. CPM (1999)
Rune B. Lyngsø, Christian N. S. Pedersen, Henrik Nielsen
Metrics and Similarity Measures for Hidden Markov Models. ISMB (1999)
Christian N. S. Pedersen, Rune B. Lyngsø, Jotun Hein
Comparison of Coding DNA. CPM (1998)