Anders Krogh

Publication Activity (10 Years)

Years Active: 1989-2024
Publications (10 Years): 10

Top Topics

Maximum A Posteriori

Manifold Learning

Top Venues

PLoS Comput. Biol.

Publications

Jennifer Anne Bartell, Sander Boisen Valentin, Anders Krogh, Henning Langberg, Martin Bøgsted
A primer on synthetic health data. CoRR (2024)
Viktoria Schuster, Anders Krogh
The Deep Generative Decoder: MAP estimation of representations improves modelling of single-cell RNA data. Bioinform. 39 (9) (2023)
Viktoria Schuster, Anders Krogh
A Manifold Learning Perspective on Representation Learning: Learning Decoder and Representations without an Encoder. Entropy 23 (11) (2021)
Viktoria Schuster, Anders Krogh
A manifold learning perspective on representation learning: Learning decoder and representations without an encoder. CoRR (2021)
Viktoria Schuster, Anders Krogh
The deep generative decoder: Using MAP estimates of representations. CoRR (2021)
Thilde Terkelsen, Anders Krogh, Elena Papaleo
CAncer bioMarker Prediction Pipeline (CAMPP) - A standardized framework for the analysis of quantitative biological data. PLoS Comput. Biol. 16 (3) (2020)
Iñigo Prada-Luengo, Anders Krogh, Lasse Maretty, Birgitte Regenberg
Sensitive detection of circular DNAs at single-nucleotide resolution using guided realignment of partially aligned reads. BMC Bioinform. 20 (1) (2019)
Maria Luisa Matey-Hernandez, Lasse Maretty, Jacob Malte Jensen, Bent Petersen, Jonas Andreas Sibbesen, Siyang Liu, Palle Villesen, Laurits Skov, Kirstine Belling, Christian Theil Have, José M. G. Izarzugaza, Marie Grosjean, Jette Bork-Jensen, Jakob Grove, Thomas D. Als, Shujia Huang, Yuqi Chang, Ruiqi Xu, Weijian Ye, Junhua Rao, Xiaosen Guo, Jihua Sun, Hongzhi Cao, Chen Ye, John van Beusekom, Thomas Espeseth, Esben N. Flindt, Rune M. Friborg, Anders E. Halager, Stephanie Le Hellard, Christina M. Hultman, Francesco Lescai, Shengting Li, Ole Lund, Peter Løngreen, Thomas Mailund, Ole Mors, Christian N. S. Pedersen, Thomas Sicheritz-Pontén, Patrick F. Sullivan, Ali Syed, David Westergaard, Rachita Yadav, Ning Li, Xun Xu, Torben Hansen, Anders Krogh, Lars Bolund, Thorkild I. A. Sørensen, Oluf Pedersen, Ramneek Gupta, Simon Rasmussen, Søren Besenbacher, Anders D. Børglum, Jun Wang, Hans Eiberg, Karsten Kristiansen, Mikkel Heide Schierup, Søren Brunak
Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios. BMC Bioinform. 19 (1) (2018)
Lasse Maretty, Jacob Malte Jensen, Bent Petersen, Jonas Andreas Sibbesen, Siyang Liu, Palle Villesen, Laurits Skov, Kirstine Belling, Christian Theil Have, José M. G. Izarzugaza, Marie Grosjean, Jette Bork-Jensen, Jakob Grove, Thomas D. Als, Shujia Huang, Yuqi Chang, Ruiqi Xu, Weijian Ye, Junhua Rao, Xiaosen Guo, Jihua Sun, Hongzhi Cao, Chen Ye, John van Beusekom, Thomas Espeseth, Esben N. Flindt, Rune M. Friborg, Anders E. Halager, Stephanie Le Hellard, Christina M. Hultman, Francesco Lescai, Shengting Li, Ole Lund, Peter Løngreen, Thomas Mailund, Maria Luisa Matey-Hernandez, Ole Mors, Christian N. S. Pedersen, Thomas Sicheritz-Pontén, Patrick F. Sullivan, Ali Syed, David Westergaard, Rachita Yadav, Ning Li, Xun Xu, Torben Hansen, Anders Krogh, Lars Bolund, Thorkild I. A. Sørensen, Oluf Pedersen, Ramneek Gupta, Simon Rasmussen, Søren Besenbacher, Anders D. Børglum, Jun Wang, Hans Eiberg, Karsten Kristiansen, Søren Brunak, Mikkel Heide Schierup
assembly of 150 genomes from Denmark as a population reference. Nat. 548 (7665) (2017)
Mireya Plass, Simon H. Rasmussen, Anders Krogh
Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors. PLoS Comput. Biol. 13 (4) (2017)
Peter Kerpedjiev, Jes Frellsen, Stinus Lindgreen, Anders Krogh
Adaptable probabilistic mapping of short reads using position specific scoring matrices. BMC Bioinform. 15 (2014)
Anders Jacobsen Skanderup, Anders Krogh, Sakari Kauppinen, Morten Lindow
miRMaid: a unified programming interface for microRNA data resources. BMC Bioinform. 11 (2010)
Eivind Valen, Albin Sandelin, Ole Winther, Anders Krogh
Discovery of Regulatory Elements is Improved by a Discriminatory Approach. PLoS Comput. Biol. 5 (11) (2009)
Lisa Bartoli, Piero Fariselli, Anders Krogh, Rita Casadio
CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information. Bioinform. 25 (21) (2009)
Man-Hung Eric Tang, Anders Krogh, Ole Winther
BayesMD: Flexible Biological Modeling for Motif Discovery. J. Comput. Biol. 15 (10) (2008)
Kyoung-Jae Won, Albin Sandelin, Troels Torben Marstrand, Anders Krogh
Modeling promoter grammars with evolving hidden Markov models. Bioinform. 24 (15) (2008)
Jan Christian Bryne, Eivind Valen, Man-Hung Eric Tang, Troels Torben Marstrand, Ole Winther, Isabelle da Piedade, Anders Krogh, Boris Lenhard, Albin Sandelin
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Nucleic Acids Res. 36 (Database-Issue) (2008)
Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer
Advantages of combined transmembrane topology and signal peptide prediction - the Phobius web server. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Kyoung-Jae Won, Thomas Hamelryck, Adam Prügel-Bennett, Anders Krogh
An evolutionary method for learning HMM structure: prediction of protein secondary structure. BMC Bioinform. 8 (2007)
Stinus Lindgreen, Paul P. Gardner, Anders Krogh
MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing. Bioinform. 23 (24) (2007)
Morten Lindow, Anders Jacobsen Skanderup, Sanne Nygaard, Yuan Mang, Anders Krogh
Intragenomic Matching Reveals a Huge Potential for miRNA-Mediated Regulation in Plants. PLoS Comput. Biol. 3 (11) (2007)
Stinus Lindgreen, Paul P. Gardner, Anders Krogh
Multiple alignment and structure prediction of non-coding RNA sequences. BMC Bioinform. 8 (S-8) (2007)
Piero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh
Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models. BIRD (2007)
Kasper Munch, Anders Krogh
Automatic generation of gene finders for eukaryotic species. BMC Bioinform. 7 (2006)
Thomas Hamelryck, John T. Kent, Anders Krogh
Sampling Realistic Protein Conformations Using Local Structural Bias. PLoS Comput. Biol. 2 (9) (2006)
Stinus Lindgreen, Paul P. Gardner, Anders Krogh
Measuring covariation in RNA alignments: physical realism improves information measures. Bioinform. 22 (24) (2006)
Kasper Munch, Paul P. Gardner, Peter Arctander, Anders Krogh
A hidden Markov model approach for determining expression from genomic tiling micro arrays. BMC Bioinform. 7 (2006)
Mauro Amico, Michele Finelli, Ivan Rossi, Andrea Zauli, Arne Elofsson, Håkan Viklund, Gunnar von Heijne, David Jones, Anders Krogh, Piero Fariselli, Pier Luigi Martelli, Rita Casadio
PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh
Evolving the structure of hidden Markov models. IEEE Trans. Evol. Comput. 10 (1) (2006)
Pernille Nielsen, Anders Krogh
Large-scale prokaryotic gene prediction and comparison to genome annotation. Bioinform. 21 (24) (2005)
Kyoung-Jae Won, Thomas Hamelryck, Adam Prügel-Bennett, Anders Krogh
Evolving hidden Markov models for protein secondary structure prediction. Congress on Evolutionary Computation (2005)
Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer
An HMM posterior decoder for sequence feature prediction that includes homology information. ISMB (Supplement of Bioinformatics) (2005)
Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh
The Block Hidden Markov Model for Biological Sequence Analysis. KES (2004)
Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh
Training HMM structure with genetic algorithm for biological sequence analysis. Bioinform. 20 (18) (2004)
Thomas Schou Larsen, Anders Krogh
EasyGene - a prokaryotic gene finder that ranks ORFs by statistical significance. BMC Bioinform. 4 (2003)
Pier Luigi Martelli, Piero Fariselli, Anders Krogh, Rita Casadio
A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. ISMB (2002)
David Ussery, Dikeos Mario Soumpasis, Søren Brunak, Hans Henrik Stærfeldt, Peder Worning, Anders Krogh
Bias of Purine Stretches in Sequenced Chromosomes. Comput. Chem. 26 (5) (2002)
Søren Brunak, Anders Krogh
ISMB 2001. ISMB (Supplement of Bioinformatics) (2001)
Jakob V. Hansen, Anders Krogh
A General Method for Combining Predictors Tested on Protein Secondary Structure Prediction. ANNIMAB (2000)
Anders Krogh, Søren Kamaric Riis
Hidden Neural Networks. Neural Comput. 11 (2) (1999)
Henrik Nielsen, Anders Krogh
Prediction of Signal Peptides and Signal Anchors by a Hidden Markov Model. ISMB (1998)
Erik L. L. Sonnhammer, Gunnar von Heijne, Anders Krogh
A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences. ISMB (1998)
John A. Hertz, Anders Krogh, Benny Lautrup, Torsten Lehmann
Nonlinear backpropagation: doing backpropagation without derivatives of the activation function. IEEE Trans. Neural Networks 8 (6) (1997)
Søren Kamaric Riis, Anders Krogh
Hidden neural networks: a framework for HMM/NN hybrids. ICASSP (1997)
Anders Krogh
Two Methods for Improving Performance of a HMM and their Application for Gene Finding. ISMB (1997)
Richard Hughey, Anders Krogh
Hidden Markov models for sequence analysis: extension and analysis of the basic method. Comput. Appl. Biosci. 12 (2) (1996)
Søren Kamaric Riis, Anders Krogh
Improving Predicition of Protein Secondary Structure Using Structured Neural Networks and Multiple Sequence Alignments. J. Comput. Biol. 3 (1) (1996)
Kimmen Sjölander, Kevin Karplus, Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, David Haussler
Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology. Comput. Appl. Biosci. 12 (4) (1996)
Peter Sollich, Anders Krogh
Learning with ensembles: How overfitting can be useful. NIPS (1995)
Pierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh
Periodic Sequence Patterns in Human Exons. ISMB (1995)
Anders Krogh, Graeme J. Mitchison
Maximum Entropy Weighting of Aligned Sequences of Proteins or DNA. ISMB (1995)
Anders Krogh, Søren Kamaric Riis
Prediction of Beta Sheets in Proteins. NIPS (1995)
Nicolò Cesa-Bianchi, Anders Krogh, Manfred K. Warmuth
Bounds on approximate steepest descent for likelihood maximization in exponential families. IEEE Trans. Inf. Theory 40 (4) (1994)
Anders Krogh, Jesper Vedelsby
Neural Network Ensembles, Cross Validation, and Active Learning. NIPS (1994)
Anders Krogh
Hidden Markov models for labeled sequences. ICPR (2) (1994)
Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, Kimmen Sjölander, David Haussler
Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein Families. ISMB (1993)
Pierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh
Hidden Markov Models for Human Genes. NIPS (1993)
Jan Gorodkin, Lars Kai Hansen, Anders Krogh, Claus Svarer, Ole Winther
A Quantitative Study Of Pruning By Optimal Brain Damage. Int. J. Neural Syst. 4 (2) (1993)
Anders Krogh, John A. Hertz
A Simple Weight Decay Can Improve Generalization. NIPS (1991)
Anders Krogh, John A. Hertz
Dynamics of Generalization in Linear Perceptrons. NIPS (1990)
Anders Krogh, C. I. Thorbergsson, John A. Hertz
A Cost Function for Internal Representations. NIPS (1989)