zipHMMlib: a highly optimised HMM library exploiting repetitions in the input to speed up the forward algorithm.
Andreas SandMartin KristiansenChristian N. S. PedersenThomas MailundPublished in: BMC Bioinform. (2013)
Keyphrases
- np hard
- learning algorithm
- objective function
- cost function
- hidden markov models
- improved algorithm
- detection algorithm
- computational cost
- dynamic programming
- preprocessing
- experimental evaluation
- times faster
- similarity measure
- memory requirements
- significant improvement
- feature selection
- classification algorithm
- theoretical analysis
- neural network
- selection algorithm
- convex hull
- tree structure
- clustering method
- motion estimation
- probabilistic model
- decision trees
- artificial neural networks
- k means