Philip C. Biggin

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 10

Top Topics

Molecular Dynamics

Protein Function

Top Venues

J. Chem. Inf. Model.

J. Cheminformatics

J. Comput. Aided Mol. Des.

PLoS Comput. Biol.

Publications

Benjamin Ries, Irfan Alibay, Nithishwer Mouroug Anand, Philip C. Biggin, Aniket Magarkar
Automated Absolute Binding Free Energy Calculation Workflow for Drug Discovery. J. Chem. Inf. Model. 64 (14) (2024)
Süleyman Selim Çinaroglu, Philip C. Biggin
Computed Protein-Protein Enthalpy Signatures as a Tool for Identifying Conformation Sampling Problems. J. Chem. Inf. Model. 63 (19) (2023)
Harold Grosjean, Mehtap Isik, Anthony Aimon, David L. Mobley, John D. Chodera, Frank von Delft, Philip C. Biggin
SAMPL7 protein-ligand challenge: A community-wide evaluation of computational methods against fragment screening and pose-prediction. J. Comput. Aided Mol. Des. 36 (4) (2022)
Rocco Meli, Garrett M. Morris, Philip C. Biggin
Scoring Functions for Protein-Ligand Binding Affinity Prediction Using Structure-based Deep Learning: A Review. Frontiers Bioinform. 2 (2022)
Marc A. Dämgen, Philip C. Biggin
State-dependent protein-lipid interactions of a pentameric ligand-gated ion channel in a neuronal membrane. PLoS Comput. Biol. 17 (2) (2021)
Rocco Meli, Andrew Anighoro, Michael J. Bodkin, Garrett M. Morris, Philip C. Biggin
Learning protein-ligand binding affinity with atomic environment vectors. J. Cheminformatics 13 (1) (2021)
Rocco Meli, Philip C. Biggin
spyrmsd: symmetry-corrected RMSD calculations in Python. J. Cheminformatics 12 (1) (2020)
Matteo Aldeghi, Michael J. Bodkin, Stefan Knapp, Philip C. Biggin
Statistical Analysis on the Performance of Molecular Mechanics Poisson-Boltzmann Surface Area versus Absolute Binding Free Energy Calculations: Bromodomains as a Case Study. J. Chem. Inf. Model. 57 (9) (2017)
Alexander Heifetz, Ewa I. Chudyk, Laura Gleave, Matteo Aldeghi, Vadim Cherezov, Dmitri G. Fedorov, Philip C. Biggin, Michael J. Bodkin
The Fragment Molecular Orbital Method Reveals New Insight into the Chemical Nature of GPCR-Ligand Interactions. J. Chem. Inf. Model. 56 (1) (2016)
Maria Musgaard, Philip C. Biggin
Steered Molecular Dynamics Simulations Predict Conformational Stability of Glutamate Receptors. J. Chem. Inf. Model. 56 (9) (2016)
Márton Münz, Jotun Hein, Philip C. Biggin
The Role of Flexibility and Conformational Selection in the Binding Promiscuity of PDZ Domains. PLoS Comput. Biol. 8 (11) (2012)
Márton Münz, Philip C. Biggin
JGromacs: A Java Package for Analyzing Protein Simulations. J. Chem. Inf. Model. 52 (1) (2012)
Márton Münz, Rune B. Lyngsø, Jotun Hein, Philip C. Biggin
Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity. BMC Bioinform. 11 (2010)
Shabana Vohra, Benjamin A. Hall, Daniel A. Holdbrook, Syma Khalid, Philip C. Biggin
Bookshelf: a simple curation system for the storage of biomolecular simulation data. Database J. Biol. Databases Curation 2010 (2010)