MASA-OpenCL: Parallel pruned comparison of long DNA sequences with OpenCL.
Marco Antonio C. de FigueiredoEdans Flavius de Oliveira SandesGenaína Nunes RodriguesGeorge Luiz Medeiros TeodoroAlba Cristina Magalhaes Alves de MeloPublished in: Concurr. Comput. Pract. Exp. (2019)
Keyphrases
- dna sequences
- shared memory
- parallel programming
- graphics processing units
- parallel algorithm
- parallel computing
- tandem repeats
- parallel execution
- parallel processing
- message passing
- message passing interface
- parallel architectures
- dna computing
- human genome
- sequence patterns
- massively parallel
- binding sites
- dna sequencing
- parallel computation
- biological sequences
- problems in computational biology
- coding regions
- gene structure prediction
- general purpose
- motif discovery
- statistical analysis
- cloud computing
- databases
- genomic sequences
- transcription factors
- processing units
- parallel implementation
- post processing
- gene prediction