A parallel strategy for biological sequence alignment in restricted memory space.
Rodolfo Bezerra BatistaAzzedine BoukercheAlba Cristina Magalhaes Alves de MeloPublished in: J. Parallel Distributed Comput. (2008)
Keyphrases
- memory space
- sequence alignment
- memory requirements
- comparative genomics
- pairwise
- external memory
- protein sequences
- high efficiency
- limited memory
- dynamic programming
- molecular biology
- protein structure prediction
- phylogenetic analysis
- memory size
- multiple alignment
- binding sites
- biological data
- multiple sequence alignment
- gpu accelerated
- amino acids
- high accuracy