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Parallel Smith-Waterman Algorithm for Local DNA Comparison in a Cluster of Workstations.

Azzedine BoukercheAlba Cristina Magalhaes Alves de MeloMauricio Ayala-RincónThomas Mailleux Santana
Published in: WEA (2005)
Keyphrases
  • cluster of workstations
  • parallel implementation
  • parallel version
  • smith waterman
  • optimal solution
  • np hard
  • dynamic programming
  • similarity measure
  • search space
  • databases
  • depth first search
  • relative entropy