Simon Graham

Publication Activity (10 Years)

Years Active: 2001-2024
Publications (10 Years): 47

Top Topics

Colorectal Cancer

Microscopy Images

Tissue Classification

Image Segmentation

Top Venues

Medical Image Anal.

IEEE Trans. Medical Imaging

Publications

Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Martin Weigert, Uwe Schmidt, Wenhua Zhang, Jun Zhang, Sen Yang, Jinxi Xiang, Xiyue Wang, Josef Lorenz Rumberger, Elias Baumann, Peter Hirsch, Lihao Liu, Chenyang Hong, Angelica I. Avilés-Rivero, Ayushi Jain, Heeyoung Ahn, Yiyu Hong, Hussam Azzuni, Min Xu, Mohammad Yaqub, Marie-Claire Blache, Benoît Piégu, Bertrand Vernay, Tim Scherr, Moritz Böhland, Katharina Löffler, Jiachen Li, Weiqin Ying, Chixin Wang, David R. J. Snead, Shan-E-Ahmed Raza, Fayyaz Minhas, Nasir M. Rajpoot
CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting. Medical Image Anal. 92 (2024)
Yiping Jiao, Jeroen van der Laak, Shadi Albarqouni, Zhang Li, Tao Tan, Abhir Bhalerao, Shenghua Cheng, Jiabo Ma, John Pocock, Josien P. W. Pluim, Navid Alemi Koohbanani, Raja Muhammad Saad Bashir, Shan-E-Ahmed Raza, Sibo Liu, Simon Graham, Suzanne C. Wetstein, Syed Ali Khurram, Xiuli Liu, Nasir M. Rajpoot, Mitko Veta, Francesco Ciompi
LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset. IEEE J. Biomed. Health Informatics 28 (3) (2024)
Mostafa Jahanifar, Adam Shephard, Neda Zamanitajeddin, Simon Graham, Shan E Ahmed Raza, Fayyaz Minhas, Nasir M. Rajpoot
Mitosis detection, fast and slow: Robust and efficient detection of mitotic figures. Medical Image Anal. 94 (2024)
Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Shan-e-Ahmed Raza, Fayyaz A. Afsar, David R. J. Snead, Nasir M. Rajpoot
One model is all you need: Multi-task learning enables simultaneous histology image segmentation and classification. Medical Image Anal. 83 (2023)
Quoc Dang Vu, Robert Jewsbury, Simon Graham, Mostafa Jahanifar, Shan e Ahmed Raza, Fayyaz Minhas, Abhir Bhalerao, Nasir M. Rajpoot
Nuclear Segmentation and Classification: On Color & Compression Generalization. CoRR (2023)
Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Martin Weigert, Uwe Schmidt, Wenhua Zhang, Jun Zhang, Sen Yang, Jinxi Xiang, Xiyue Wang, Josef Lorenz Rumberger, Elias Baumann, Peter Hirsch, Lihao Liu, Chenyang Hong, Angelica I. Avilés-Rivero, Ayushi Jain, Heeyoung Ahn, Yiyu Hong, Hussam Azzuni, Min Xu, Mohammad Yaqub, Marie-Claire Blache, Benoît Piégu, Bertrand Vernay, Tim Scherr, Moritz Böhland, Katharina Löffler, Jiachen Li, Weiqin Ying, Chixin Wang, Dagmar Kainmueller, Carola-Bibiane Schönlieb, Shuolin Liu, Dhairya Talsania, Yughender Meda, Prakash Mishra, Muhammad Ridzuan, Oliver Neumann, Marcel P. Schilling, Markus Reischl, Ralf Mikut, Banban Huang, Hsiang-Chin Chien, Ching-Ping Wang, Chia-Yen Lee, Hong-Kun Lin, Zaiyi Liu, Xipeng Pan, Chu Han, Jijun Cheng, Muhammad Dawood, Srijay Deshpande, Raja Muhammad Saad Bashir, Adam Shephard, Pedro Costa, João D. Nunes, Aurélio Campilho, Jaime S. Cardoso, Hrishikesh P. S, Densen Puthussery, Devika R. G, Jiji C V, Ye Zhang, Zijie Fang, Zhifan Lin, Yongbing Zhang, Chunhui Lin, Liukun Zhang, Lijian Mao, Min Wu, Thi Tuong Vi Vo, Soo-Hyung Kim, Taebum Lee, Satoshi Kondo, Satoshi Kasai, Pranay Dumbhare, Vedant Phuse, Yash Dubey, Ankush Jamthikar, Trinh Thi Le Vuong, Jin Tae Kwak, Dorsa Ziaei, Hyun Jung, Tianyi Miao, David R. J. Snead, Shan-e-Ahmed Raza, Fayyaz Minhas, Nasir M. Rajpoot
CoNIC Challenge: Pushing the Frontiers of Nuclear Detection, Segmentation, Classification and Counting. CoRR (2023)
Yiping Jiao, Jeroen van der Laak, Shadi Albarqouni, Zhang Li, Tao Tan, Abhir Bhalerao, Jiabo Ma, Jiamei Sun, Johnathon Pocock, Josien P. W. Pluim, Navid Alemi Koohbanani, Raja Muhammad Saad Bashir, Shan e Ahmed Raza, Sibo Liu, Simon Graham, Suzanne C. Wetstein, Syed Ali Khurram, Thomas Watson, Nasir M. Rajpoot, Mitko Veta, Francesco Ciompi
LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset. CoRR (2023)
Adam J. Shephard, Mostafa Jahanifar, Ruoyu Wang, Muhammad Dawood, Simon Graham, Kastytis Sidlauskas, Syed Ali Khurram, Nasir M. Rajpoot, Shan E Ahmed Raza
An Automated Pipeline for Tumour-Infiltrating Lymphocyte Scoring in Breast Cancer. CoRR (2023)
Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Fayyaz A. Minhas, David R. J. Snead, Nasir M. Rajpoot
One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification. CoRR (2022)
Srijay Deshpande, Fayyaz A. Minhas, Simon Graham, Nasir M. Rajpoot
SAFRON: Stitching Across the Frontier Network for Generating Colorectal Cancer Histology Images. Medical Image Anal. 77 (2022)
Trinh Thi Le Vuong, Quoc Dang Vu, Mostafa Jahanifar, Simon Graham, Jin Tae Kwak, Nasir M. Rajpoot
IMPaSh: A Novel Domain-shift Resistant Representation for Colorectal Cancer Tissue Classification. CoRR (2022)
Adam J. Shephard, Mostafa Jahanifar, Ruoyu Wang, Muhammad Dawood, Simon Graham, Kastytis Sidlauskas, Syed Ali Khurram, Nasir M. Rajpoot, Shan e Ahmed Raza
TIAger: Tumor-Infiltrating Lymphocyte Scoring in Breast Cancer for the TiGER Challenge. CoRR (2022)
Quoc Dang Vu, Robert Jewsbury, Simon Graham, Mostafa Jahanifar, Shan-e-Ahmed Raza, Fayyaz Minhas, Abhir Bhalerao, Nasir M. Rajpoot
Nuclear Segmentation and Classification: On Color and Compression Generalization. MLMI@MICCAI (2022)
Trinh Thi Le Vuong, Quoc Dang Vu, Mostafa Jahanifar, Simon Graham, Jin Tae Kwak, Nasir M. Rajpoot
IMPaSh: A Novel Domain-Shift Resistant Representation for Colorectal Cancer Tissue Classification. ECCV Workshops (3) (2022)
Callum Christopher Mackenzie, Muhammad Dawood, Simon Graham, Mark Eastwood, Fayyaz ul Amir Afsar Minhas
Neural Graph Modelling of Whole Slide Images for Survival Ranking. LoG (2022)
Qian Da, Xiaodi Huang, Zhongyu Li, Yanfei Zuo, Chenbin Zhang, Jingxin Liu, Wen Chen, Jiahui Li, Dou Xu, Zhiqiang Hu, Hongmei Yi, Yan Guo, Zhe Wang, Ling Chen, Li Zhang, Xianying He, Xiaofan Zhang, Ke Mei, Chuang Zhu, Weizeng Lu, Linlin Shen, Jun Shi, Jun Li, Sreehari S, Ganapathy Krishnamurthi, Jiangcheng Yang, Tiancheng Lin, Qingyu Song, Xuechen Liu, Simon Graham, Raja Muhammad Saad Bashir, Canqian Yang, Shaofei Qin, Xinmei Tian, Baocai Yin, Jie Zhao, Dimitris N. Metaxas, Hongsheng Li, Chaofu Wang, Shaoting Zhang
DigestPath: A benchmark dataset with challenge review for the pathological detection and segmentation of digestive-system. Medical Image Anal. 80 (2022)
Simon Graham, Mostafa Jahanifar, Quoc Dang Vu, Giorgos Hadjigeorghiou, Thomas Leech, David R. J. Snead, Shan e Ahmed Raza, Fayyaz A. Minhas, Nasir M. Rajpoot
CoNIC: Colon Nuclei Identification and Counting Challenge 2022. CoRR (2021)
Simon Graham, Mostafa Jahanifar, Ayesha Azam, Mohammed Nimir, Yee-Wah Tsang, Katherine Dodd, Emily Hero, Harvir Sahota, Atisha Tank, Ksenija Benes, Noorul Wahab, Fayyaz A. Minhas, Shan-e-Ahmed Raza, Hesham Eldaly, Kishore Gopalakrishnan, David R. J. Snead, Nasir M. Rajpoot
Lizard: A Large-Scale Dataset for Colonic Nuclear Instance Segmentation and Classification. CoRR (2021)
Adam J. Shephard, Simon Graham, Raja Muhammad Saad Bashir, Mostafa Jahanifar, Hanya Mahmood, Syed Ali Khurram, Nasir M. Rajpoot
Simultaneous Nuclear Instance and Layer Segmentation in Oral Epithelial Dysplasia. ICCVW (2021)
Ruchika Verma, Neeraj Kumar, Abhijeet Patil, Nikhil Cherian Kurian, Swapnil Rane, Simon Graham, Quoc Dang Vu, Mieke Zwager, Shan-e-Ahmed Raza, Nasir M. Rajpoot, Xiyi Wu, Huai Chen, Yijie Huang, Lisheng Wang, Hyun Jung, G. Thomas Brown, Yanling Liu, Shuolin Liu, Seyed Alireza Fatemi Jahromi, Ali Asghar Khani, Ehsan Montahaei, Mahdieh Soleymani Baghshah, Hamid Behroozi, Pavel Semkin, Alexandr Rassadin, Prasad Dutande, Romil Lodaya, Ujjwal Baid, Bhakti Baheti, Sanjay N. Talbar, Amirreza Mahbod, Rupert Ecker, Isabella Ellinger, Zhipeng Luo, Bin Dong, Zhengyu Xu, Yuehan Yao, Shuai Lv, Ming Feng, Kele Xu, Hasib Zunair, Abdessamad Ben Hamza, Steven M. Smiley, Tang-Kai Yin, Qi-Rui Fang, Shikhar Srivastava, Dwarikanath Mahapatra, Lubomira Trnavska, Hanyun Zhang, Priya Lakshmi Narayanan, Justin Law, Yinyin Yuan, Abhiroop Tejomay, Aditya Mitkari, Dinesh Koka, Vikas Ramachandra, Lata Kini, Amit Sethi
MoNuSAC2020: A Multi-Organ Nuclei Segmentation and Classification Challenge. IEEE Trans. Medical Imaging 40 (12) (2021)
Simon Graham, Mostafa Jahanifar, Ayesha Azam, Mohammed Nimir, Yee-Wah Tsang, Katherine Dodd, Emily Hero, Harvir Sahota, Atisha Tank, Ksenija Benes, Noorul Wahab, Fayyaz A. Minhas, Shan-e-Ahmed Raza, Hesham Eldaly, Kishore Gopalakrishnan, David R. J. Snead, Nasir M. Rajpoot
Lizard: A Large-Scale Dataset for Colonic Nuclear Instance Segmentation and Classification. ICCVW (2021)
Noor ul Wahab, Islam M. Miligy, Katherine Dodd, Harvir Sahota, Michael Toss, Wenqi Lu, Mostafa Jahanifar, Mohsin Bilal, Simon Graham, Young Park, Giorgos Hadjigeorghiou, Abhir Bhalerao, Ayat Lashen, Asmaa Ibrahim, Ayaka Katayama, Henry O. Ebili, Matthew Parkin, Tom Sorell, Shan e Ahmed Raza, Emily Hero, Hesham Eldaly, Yee-Wah Tsang, Kishore Gopalakrishnan, David R. J. Snead, Emad Rakha, Nasir M. Rajpoot, Fayyaz A. Minhas
Semantic annotation for computational pathology: Multidisciplinary experience and best practice recommendations. CoRR (2021)
Adam J. Shephard, Simon Graham, Raja Muhammad Saad Bashir, Mostafa Jahanifar, Hanya Mahmood, Syed Ali Khurram, Nasir M. Rajpoot
Simultaneous Nuclear Instance and Layer Segmentation in Oral Epithelial Dysplasia. CoRR (2021)
Srijay Deshpande, Fayyaz A. Minhas, Simon Graham, Nasir M. Rajpoot
SAFRON: Stitching Across the Frontier for Generating Colorectal Cancer Histology Images. CoRR (2020)
Simon Graham, David B. A. Epstein, Nasir M. Rajpoot
Dense Steerable Filter CNNs for Exploiting Rotational Symmetry in Histology Images. CoRR (2020)
Wenqi Lu, Simon Graham, Mohsin Bilal, Nasir M. Rajpoot, Fayyaz A. Minhas
Capturing Cellular Topology in Multi-Gigapixel Pathology Images. CVPR Workshops (2020)
Neeraj Kumar, Ruchika Verma, Deepak Anand, Yanning Zhou, Omer Fahri Onder, Efstratios Tsougenis, Hao Chen, Pheng-Ann Heng, Jiahui Li, Zhiqiang Hu, Yunzhi Wang, Navid Alemi Koohbanani, Mostafa Jahanifar, Neda Zamani Tajeddin, Ali Gooya, Nasir M. Rajpoot, Xuhua Ren, Sihang Zhou, Qian Wang, Dinggang Shen, Cheng-Kun Yang, Chi-Hung Weng, Wei-Hsiang Yu, Chao-Yuan Yeh, Shuang Yang, Shuoyu Xu, Pak-Hei Yeung, Peng Sun, Amirreza Mahbod, Gerald Schaefer, Isabella Ellinger, Rupert Ecker, Örjan Smedby, Chunliang Wang, Benjamin Chidester, That-Vinh Ton, Minh-Triet Tran, Jian Ma, Minh N. Do, Simon Graham, Quoc Dang Vu, Jin Tae Kwak, Akshaykumar Gunda, Raviteja Chunduri, Corey Hu, Xiaoyang Zhou, Dariush Lotfi, Reza Safdari, Antanas Kascenas, Alison O'Neil, Dennis Eschweiler, Johannes Stegmaier, Yanping Cui, Baocai Yin, Kailin Chen, Xinmei Tian, Philipp Grüning, Erhardt Barth, Elad Arbel, Itay Remer, Amir Ben-Dor, Ekaterina Sirazitdinova, Matthias Kohl, Stefan Braunewell, Yuexiang Li, Xinpeng Xie, Linlin Shen, Jun Ma, Krishanu Das Baksi, Mohammad Azam Khan, Jaegul Choo, Adrián Colomer, Valery Naranjo, Linmin Pei, Khan M. Iftekharuddin, Kaushiki Roy, Debotosh Bhattacharjee, Aníbal Pedraza, Maria Gloria Bueno, Sabarinathan Devanathan, Saravanan Radhakrishnan, Praveen Koduganty, Zihan Wu, Guanyu Cai, Xiaojie Liu, Yuqin Wang, Amit Sethi
A Multi-Organ Nucleus Segmentation Challenge. IEEE Trans. Medical Imaging 39 (5) (2020)
M. M. Fraz, Syed Ali Khurram, Simon Graham, Muhammad Shaban, Mariam Hassan, Asif Loya, Nasir M. Rajpoot
FABnet: feature attention-based network for simultaneous segmentation of microvessels and nerves in routine histology images of oral cancer. Neural Comput. Appl. 32 (14) (2020)
Jevgenij Gamper, Navid Alemi Koohbanani, Simon Graham, Mostafa Jahanifar, Syed Ali Khurram, Ayesha Azam, Katherine Hewitt, Nasir M. Rajpoot
PanNuke Dataset Extension, Insights and Baselines. CoRR (2020)
Simon Graham, David B. A. Epstein, Nasir M. Rajpoot
Dense Steerable Filter CNNs for Exploiting Rotational Symmetry in Histology Images. IEEE Trans. Medical Imaging 39 (12) (2020)
Shan e Ahmed Raza, Linda Cheung, Muhammad Shaban, Simon Graham, David B. A. Epstein, Stella Pelengaris, Michael Khan, Nasir M. Rajpoot
Micro-Net: A unified model for segmentation of various objects in microscopy images. Medical Image Anal. 52 (2019)
Huangjing Lin, Hao Chen, Simon Graham, Qi Dou, Nasir M. Rajpoot, Pheng-Ann Heng
Fast ScanNet: Fast and Dense Analysis of Multi-Gigapixel Whole-Slide Images for Cancer Metastasis Detection. IEEE Trans. Medical Imaging 38 (8) (2019)
Simon Graham, David B. A. Epstein, Nasir M. Rajpoot
Rota-Net: Rotation Equivariant Network for Simultaneous Gland and Lumen Segmentation in Colon Histology Images. ECDP (2019)
Yanning Zhou, Simon Graham, Navid Alemi Koohbanani, Muhammad Shaban, Pheng-Ann Heng, Nasir M. Rajpoot
CGC-Net: Cell Graph Convolutional Network for Grading of Colorectal Cancer Histology Images. CoRR (2019)
Simon Graham, Quoc Dang Vu, Shan e Ahmed Raza, Ayesha Azam, Yee-Wah Tsang, Jin Tae Kwak, Nasir M. Rajpoot
Hover-Net: Simultaneous segmentation and classification of nuclei in multi-tissue histology images. Medical Image Anal. 58 (2019)
Simon Graham, Hao Chen, Jevgenij Gamper, Qi Dou, Pheng-Ann Heng, David R. J. Snead, Yee-Wah Tsang, Nasir M. Rajpoot
MILD-Net: Minimal information loss dilated network for gland instance segmentation in colon histology images. Medical Image Anal. 52 (2019)
Yanning Zhou, Simon Graham, Navid Alemi Koohbanani, Muhammad Shaban, Pheng-Ann Heng, Nasir M. Rajpoot
CGC-Net: Cell Graph Convolutional Network for Grading of Colorectal Cancer Histology Images. ICCV Workshops (2019)
Mitko Veta, Yujing J. Heng, Nikolas Stathonikos, Babak Ehteshami Bejnordi, Francisco Beca, Thomas Wollmann, Karl Rohr, Manan A. Shah, Dayong Wang, Mikaël Rousson, Martin Hedlund, David Tellez, Francesco Ciompi, Erwan Zerhouni, David Lanyi, Matheus Palhares Viana, Vassili Kovalev, Vitali Liauchuk, Hady Ahmady Phoulady, Talha Qaiser, Simon Graham, Nasir M. Rajpoot, Erik Sjöblom, Jesper Molin, Kyunghyun Paeng, Sangheum Hwang, Sunggyun Park, Zhipeng Jia, Eric I-Chao Chang, Yan Xu, Andrew H. Beck, Paul J. van Diest, Josien P. W. Pluim
Predicting breast tumor proliferation from whole-slide images: the TUPAC16 challenge. CoRR (2018)
Saad Ullah Akram, Talha Qaiser, Simon Graham, Juho Kannala, Janne Heikkilä, Nasir M. Rajpoot
Leveraging Unlabeled Whole-Slide-Images for Mitosis Detection. CoRR (2018)
M. M. Fraz, Muhammad Shaban, Simon Graham, Syed Ali Khurram, Nasir M. Rajpoot
Uncertainty Driven Pooling Network for Microvessel Segmentation in Routine Histology Images. COMPAY/OMIA@MICCAI (2018)
Saad Ullah Akram, Talha Qaiser, Simon Graham, Juho Kannala, Janne Heikkilä, Nasir M. Rajpoot
Leveraging Unlabeled Whole-Slide-Images for Mitosis Detection. COMPAY/OMIA@MICCAI (2018)
Shan-e-Ahmed Raza, Linda Cheung, Muhammad Shaban, Simon Graham, David B. A. Epstein, Stella Pelengaris, Michael Khan, Nasir M. Rajpoot
Micro-Net: A unified model for segmentation of various objects in microscopy images. CoRR (2018)
Simon Graham, Nasir M. Rajpoot
SAMS-NET: Stain-aware multi-scale network for instance-based nuclei segmentation in histology images. ISBI (2018)
Quoc Dang Vu, Simon Graham, Minh Nguyen Nhat To, Muhammad Shaban, Talha Qaiser, Navid Alemi Koohbanani, Syed Ali Khurram, Tahsin M. Kurç, Keyvan Farahani, Tianhao Zhao, Rajarsi R. Gupta, Jin Tae Kwak, Nasir M. Rajpoot, Joel H. Saltz
Methods for Segmentation and Classification of Digital Microscopy Tissue Images. CoRR (2018)
Simon Graham, Muhammad Shaban, Talha Qaiser, Syed Ali Khurram, Nasir M. Rajpoot
Classification of lung cancer histology images using patch-level summary statistics. Medical Imaging: Digital Pathology (2018)
Simon Graham, Hao Chen, Qi Dou, Pheng-Ann Heng, Nasir M. Rajpoot
MILD-Net: Minimal Information Loss Dilated Network for Gland Instance Segmentation in Colon Histology Images. CoRR (2018)
Simon Graham, Quoc Dang Vu, Shan e Ahmed Raza, Jin Tae Kwak, Nasir M. Rajpoot
XY Network for Nuclear Segmentation in Multi-Tissue Histology Images. CoRR (2018)
Simon Graham
Mobilizing a graduate school. SIGUCCS (2001)