Mostafa Jahanifar

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 45

Top Topics

Colorectal Cancer

Interactive Segmentation

Microscopic Images

Top Venues

Medical Image Anal.

Publications

Marc Aubreville, Nikolas Stathonikos, Taryn A. Donovan, Robert Klopfleisch, Jonas Ammeling, Jonathan Ganz, Frauke Wilm, Mitko Veta, Samir Jabari, Markus Eckstein, Jonas Annuscheit, Christian Krumnow, Engin Bozaba, Sercan Çayir, Hongyan Gu, Xiang Anthony Chen, Mostafa Jahanifar, Adam Shephard, Satoshi Kondo, Satoshi Kasai, Sujatha Kotte, VG Saipradeep, Maxime W. Lafarge, Viktor H. Koelzer, Ziyue Wang, Yongbing Zhang, Sen Yang, Xiyue Wang, Katharina Breininger, Christof A. Bertram
Domain generalization across tumor types, laboratories, and species - Insights from the 2022 edition of the Mitosis Domain Generalization Challenge. Medical Image Anal. 94 (2024)
Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Martin Weigert, Uwe Schmidt, Wenhua Zhang, Jun Zhang, Sen Yang, Jinxi Xiang, Xiyue Wang, Josef Lorenz Rumberger, Elias Baumann, Peter Hirsch, Lihao Liu, Chenyang Hong, Angelica I. Avilés-Rivero, Ayushi Jain, Heeyoung Ahn, Yiyu Hong, Hussam Azzuni, Min Xu, Mohammad Yaqub, Marie-Claire Blache, Benoît Piégu, Bertrand Vernay, Tim Scherr, Moritz Böhland, Katharina Löffler, Jiachen Li, Weiqin Ying, Chixin Wang, David R. J. Snead, Shan-E-Ahmed Raza, Fayyaz Minhas, Nasir M. Rajpoot
CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting. Medical Image Anal. 92 (2024)
Neda Zamanitajeddin, Mostafa Jahanifar, Mohsin Bilal, Mark Eastwood, Nasir M. Rajpoot
Social network analysis of cell networks improves deep learning for prediction of molecular pathways and key mutations in colorectal cancer. Medical Image Anal. 93 (2024)
Mark Eastwood, John Pocock, Mostafa Jahanifar, Adam Shephard, Skiros Habib, Ethar Alzaid, Abdullah Alsalemi, Jan Lukas Robertus, Nasir M. Rajpoot, Shan E Ahmed Raza, Fayyaz Minhas
TIAViz: A Browser-based Visualization Tool for Computational Pathology Models. CoRR (2024)
Mostafa Jahanifar, Adam Shephard, Neda Zamanitajeddin, Simon Graham, Shan E Ahmed Raza, Fayyaz Minhas, Nasir M. Rajpoot
Mitosis detection, fast and slow: Robust and efficient detection of mitotic figures. Medical Image Anal. 94 (2024)
Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Shan-e-Ahmed Raza, Fayyaz A. Afsar, David R. J. Snead, Nasir M. Rajpoot
One model is all you need: Multi-task learning enables simultaneous histology image segmentation and classification. Medical Image Anal. 83 (2023)
Quoc Dang Vu, Robert Jewsbury, Simon Graham, Mostafa Jahanifar, Shan e Ahmed Raza, Fayyaz Minhas, Abhir Bhalerao, Nasir M. Rajpoot
Nuclear Segmentation and Classification: On Color & Compression Generalization. CoRR (2023)
Mostafa Jahanifar, Manahil Raza, Kesi Xu, Trinh Thi Le Vuong, Robert Jewsbury, Adam Shephard, Neda Zamanitajeddin, Jin Tae Kwak, Shan E Ahmed Raza, Fayyaz Minhas, Nasir M. Rajpoot
Domain Generalization in Computational Pathology: Survey and Guidelines. CoRR (2023)
Marc Aubreville, Nikolas Stathonikos, Taryn A. Donovan, Robert Klopfleisch, Jonathan Ganz, Jonas Ammeling, Frauke Wilm, Mitko Veta, Samir Jabari, Markus Eckstein, Jonas Annuscheit, Christian Krumnow, Engin Bozaba, Sercan Cayir, Hongyan Gu, Xiang 'Anthony' Chen, Mostafa Jahanifar, Adam Shephard, Satoshi Kondo, Satoshi Kasai, Sujatha Kotte, VG Saipradeep, Maxime W. Lafarge, Viktor H. Koelzer, Ziyue Wang, Yongbing Zhang, Sen Yang, Xiyue Wang, Katharina Breininger, Christof A. Bertram
Domain generalization across tumor types, laboratories, and species - insights from the 2022 edition of the Mitosis Domain Generalization Challenge. CoRR (2023)
Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Martin Weigert, Uwe Schmidt, Wenhua Zhang, Jun Zhang, Sen Yang, Jinxi Xiang, Xiyue Wang, Josef Lorenz Rumberger, Elias Baumann, Peter Hirsch, Lihao Liu, Chenyang Hong, Angelica I. Avilés-Rivero, Ayushi Jain, Heeyoung Ahn, Yiyu Hong, Hussam Azzuni, Min Xu, Mohammad Yaqub, Marie-Claire Blache, Benoît Piégu, Bertrand Vernay, Tim Scherr, Moritz Böhland, Katharina Löffler, Jiachen Li, Weiqin Ying, Chixin Wang, Dagmar Kainmueller, Carola-Bibiane Schönlieb, Shuolin Liu, Dhairya Talsania, Yughender Meda, Prakash Mishra, Muhammad Ridzuan, Oliver Neumann, Marcel P. Schilling, Markus Reischl, Ralf Mikut, Banban Huang, Hsiang-Chin Chien, Ching-Ping Wang, Chia-Yen Lee, Hong-Kun Lin, Zaiyi Liu, Xipeng Pan, Chu Han, Jijun Cheng, Muhammad Dawood, Srijay Deshpande, Raja Muhammad Saad Bashir, Adam Shephard, Pedro Costa, João D. Nunes, Aurélio Campilho, Jaime S. Cardoso, Hrishikesh P. S, Densen Puthussery, Devika R. G, Jiji C V, Ye Zhang, Zijie Fang, Zhifan Lin, Yongbing Zhang, Chunhui Lin, Liukun Zhang, Lijian Mao, Min Wu, Thi Tuong Vi Vo, Soo-Hyung Kim, Taebum Lee, Satoshi Kondo, Satoshi Kasai, Pranay Dumbhare, Vedant Phuse, Yash Dubey, Ankush Jamthikar, Trinh Thi Le Vuong, Jin Tae Kwak, Dorsa Ziaei, Hyun Jung, Tianyi Miao, David R. J. Snead, Shan-e-Ahmed Raza, Fayyaz Minhas, Nasir M. Rajpoot
CoNIC Challenge: Pushing the Frontiers of Nuclear Detection, Segmentation, Classification and Counting. CoRR (2023)
Marc Aubreville, Nikolas Stathonikos, Christof A. Bertram, Robert Klopfleisch, Natalie ter Hoeve, Francesco Ciompi, Frauke Wilm, Christian Marzahl, Taryn A. Donovan, Andreas K. Maier, Jack Breen, Nishant Ravikumar, Youjin Chung, Jinah Park, Ramin Nateghi, Fattaneh Pourakpour, Rutger H. J. Fick, Saima Ben Hadj, Mostafa Jahanifar, Adam Shephard, Jakob Dexl, Thomas Wittenberg, Satoshi Kondo, Maxime W. Lafarge, Viktor H. Koelzer, Jingtang Liang, Yubo Wang, Xi Long, Jingxin Liu, Salar Razavi, April Khademi, Sen Yang, Xiyue Wang, Ramona Erber, Andrea Klang, Karoline Lipnik, Pompei Bolfa, Michael J. Dark, Gabriel Wasinger, Mitko Veta, Katharina Breininger
Mitosis domain generalization in histopathology images - The MIDOG challenge. Medical Image Anal. 84 (2023)
Adam J. Shephard, Raja Muhammad Saad Bashir, Hanya Mahmood, Mostafa Jahanifar, Fayyaz Minhas, Shan E Ahmed Raza, Kris D. McCombe, Stephanie G. Craig, Jacqueline James, Jill Brooks, Paul Nankivell, Hisham Mehanna, Syed Ali Khurram, Nasir M. Rajpoot
A Fully Automated and Explainable Algorithm for the Prediction of Malignant Transformation in Oral Epithelial Dysplasia. CoRR (2023)
Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Sharib Ali, Vincent Andrearczyk, Marc Aubreville, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Veronika Cheplygina, Marie Daum, Marleen de Bruijne, Adrien Depeursinge, Reuben Dorent, Jan Egger, David G. Ellis, Sandy Engelhardt, Melanie Ganz, Noha M. Ghatwary, Gabriel Girard, Patrick Godau, Anubha Gupta, Lasse Hansen, Kanako Harada, Mattias P. Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Pierre Jannin, A. Emre Kavur, Oldrich Kodym, Michal Kozubek, Jianning Li, Hongwei Bran Li, Jun Ma, Carlos Martín-Isla, Bjoern H. Menze, J. Alison Noble, Valentin Oreiller, Nicolas Padoy, Sarthak Pati, Kelly Payette, Tim Rädsch, Jonathan Rafael-Patino, Vivek Singh Bawa, Stefanie Speidel, Carole H. Sudre, Kimberlin M. H. van Wijnen, M. Wagner, D. Wei, Amine Yamlahi, Moi Hoon Yap, C. Yuan, Maximilian Zenk, A. Zia, David Zimmerer, Dogu Baran Aydogan, B. Bhattarai, Louise Bloch, Raphael Brüngel, J. Cho, C. Choi, Q. Dou, Ivan Ezhov, Christoph M. Friedrich, C. Fuller, Rebati Raman Gaire, Adrian Galdran, Álvaro García-Faura, Maria Grammatikopoulou, S. Hong, Mostafa Jahanifar, I. Jang, Abdolrahim Kadkhodamohammadi, I. Kang, Florian Kofler, S. Kondo, Hugo Jaco Kuijf, M. Li, M. Luu, Tomaz Martincic, P. Morais, M. A. Naser, B. Oliveira, D. Owen, S. Pang, J. Park, S. Park, S. Plotka, Élodie Puybareau, Nasir M. Rajpoot, K. Ryu, N. Saeed, Adam Shephard, P. Shi, Dejan Stepec, Ronast Subedi, Guillaume Tochon, Helena R. Torres, Hélène Urien, João L. Vilaça, Kareem A. Wahid, H. Wang, J. Wang, L. Wang, X. Wang, Benedikt Wiestler, Marek Wodzinski, F. Xia, J. Xie, Z. Xiong, S. Yang, Y. Yang, Z. Zhao, Klaus H. Maier-Hein, Paul F. Jäger, Annette Kopp-Schneider, Lena Maier-Hein
Why is the Winner the Best? CVPR (2023)
Adam J. Shephard, Mostafa Jahanifar, Ruoyu Wang, Muhammad Dawood, Simon Graham, Kastytis Sidlauskas, Syed Ali Khurram, Nasir M. Rajpoot, Shan E Ahmed Raza
An Automated Pipeline for Tumour-Infiltrating Lymphocyte Scoring in Breast Cancer. CoRR (2023)
Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Fayyaz A. Minhas, David R. J. Snead, Nasir M. Rajpoot
One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification. CoRR (2022)
Trinh Thi Le Vuong, Quoc Dang Vu, Mostafa Jahanifar, Simon Graham, Jin Tae Kwak, Nasir M. Rajpoot
IMPaSh: A Novel Domain-shift Resistant Representation for Colorectal Cancer Tissue Classification. CoRR (2022)
Adam J. Shephard, Mostafa Jahanifar, Ruoyu Wang, Muhammad Dawood, Simon Graham, Kastytis Sidlauskas, Syed Ali Khurram, Nasir M. Rajpoot, Shan e Ahmed Raza
TIAger: Tumor-Infiltrating Lymphocyte Scoring in Breast Cancer for the TiGER Challenge. CoRR (2022)
Mostafa Jahanifar, Adam J. Shephard, Neda Zamanitajeddin, Shan e Ahmed Raza, Nasir M. Rajpoot
Stain-Robust Mitotic Figure Detection for MIDOG 2022 Challenge. CoRR (2022)
Marc Aubreville, Nikolas Stathonikos, Christof A. Bertram, Robert Klopfleisch, Natalie D. ter Hoeve, Francesco Ciompi, Frauke Wilm, Christian Marzahl, Taryn A. Donovan, Andreas K. Maier, Jack Breen, Nishant Ravikumar, Youjin Chung, Jinah Park, Ramin Nateghi, Fattaneh Pourakpour, Rutger H. J. Fick, Saima Ben Hadj, Mostafa Jahanifar, Nasir M. Rajpoot, Jakob Dexl, Thomas Wittenberg, Satoshi Kondo, Maxime W. Lafarge, Viktor H. Koelzer, Jingtang Liang, Yubo Wang, Xi Long, Jingxin Liu, Salar Razavi, April Khademi, Sen Yang, Xiyue Wang, Mitko Veta, Katharina Breininger
Mitosis domain generalization in histopathology images - The MIDOG challenge. CoRR (2022)
Quoc Dang Vu, Robert Jewsbury, Simon Graham, Mostafa Jahanifar, Shan-e-Ahmed Raza, Fayyaz Minhas, Abhir Bhalerao, Nasir M. Rajpoot
Nuclear Segmentation and Classification: On Color and Compression Generalization. MLMI@MICCAI (2022)
Trinh Thi Le Vuong, Quoc Dang Vu, Mostafa Jahanifar, Simon Graham, Jin Tae Kwak, Nasir M. Rajpoot
IMPaSh: A Novel Domain-Shift Resistant Representation for Colorectal Cancer Tissue Classification. ECCV Workshops (3) (2022)
Mostafa Jahanifar, Adam J. Shephard, Neda Zamani Tajeddin, Raja Muhammad Saad Bashir, Mohsin Bilal, Syed Ali Khurram, Fayyaz A. Minhas, Nasir M. Rajpoot
Stain-Robust Mitotic Figure Detection for the Mitosis Domain Generalization Challenge. CoRR (2021)
Simon Graham, Mostafa Jahanifar, Quoc Dang Vu, Giorgos Hadjigeorghiou, Thomas Leech, David R. J. Snead, Shan e Ahmed Raza, Fayyaz A. Minhas, Nasir M. Rajpoot
CoNIC: Colon Nuclei Identification and Counting Challenge 2022. CoRR (2021)
Simon Graham, Mostafa Jahanifar, Ayesha Azam, Mohammed Nimir, Yee-Wah Tsang, Katherine Dodd, Emily Hero, Harvir Sahota, Atisha Tank, Ksenija Benes, Noorul Wahab, Fayyaz A. Minhas, Shan-e-Ahmed Raza, Hesham Eldaly, Kishore Gopalakrishnan, David R. J. Snead, Nasir M. Rajpoot
Lizard: A Large-Scale Dataset for Colonic Nuclear Instance Segmentation and Classification. CoRR (2021)
Adam J. Shephard, Simon Graham, Raja Muhammad Saad Bashir, Mostafa Jahanifar, Hanya Mahmood, Syed Ali Khurram, Nasir M. Rajpoot
Simultaneous Nuclear Instance and Layer Segmentation in Oral Epithelial Dysplasia. ICCVW (2021)
Mostafa Jahanifar, Adam Shepard, Neda Zamanitajeddin, Raja Muhammad Saad Bashir, Mohsin Bilal, Syed Ali Khurram, Fayyaz A. Minhas, Nasir M. Rajpoot
Stain-Robust Mitotic Figure Detection for the Mitosis Domain Generalization Challenge. MIDOG/MOOD/Learn2Reg@MICCAI (2021)
Mostafa Jahanifar, Neda Zamani Tajeddin, Navid Alemi Koohbanani, Nasir M. Rajpoot
Robust Interactive Semantic Segmentation of Pathology Images with Minimal User Input. CoRR (2021)
Mostafa Jahanifar, Neda Zamani Tajeddin, Navid Alemi Koohbanani, Nasir M. Rajpoot
Robust Interactive Semantic Segmentation of Pathology Images with Minimal User Input. ICCVW (2021)
Simon Graham, Mostafa Jahanifar, Ayesha Azam, Mohammed Nimir, Yee-Wah Tsang, Katherine Dodd, Emily Hero, Harvir Sahota, Atisha Tank, Ksenija Benes, Noorul Wahab, Fayyaz A. Minhas, Shan-e-Ahmed Raza, Hesham Eldaly, Kishore Gopalakrishnan, David R. J. Snead, Nasir M. Rajpoot
Lizard: A Large-Scale Dataset for Colonic Nuclear Instance Segmentation and Classification. ICCVW (2021)
Noor ul Wahab, Islam M. Miligy, Katherine Dodd, Harvir Sahota, Michael Toss, Wenqi Lu, Mostafa Jahanifar, Mohsin Bilal, Simon Graham, Young Park, Giorgos Hadjigeorghiou, Abhir Bhalerao, Ayat Lashen, Asmaa Ibrahim, Ayaka Katayama, Henry O. Ebili, Matthew Parkin, Tom Sorell, Shan e Ahmed Raza, Emily Hero, Hesham Eldaly, Yee-Wah Tsang, Kishore Gopalakrishnan, David R. J. Snead, Emad Rakha, Nasir M. Rajpoot, Fayyaz A. Minhas
Semantic annotation for computational pathology: Multidisciplinary experience and best practice recommendations. CoRR (2021)
Neda Zamanitajeddin, Mostafa Jahanifar, Nasir M. Rajpoot
Cells are Actors: Social Network Analysis with Classical ML for SOTA Histology Image Classification. MICCAI (8) (2021)
Neda Zamanitajeddin, Mostafa Jahanifar, Nasir M. Rajpoot
Cells are Actors: Social Network Analysis with Classical ML for SOTA Histology Image Classification. CoRR (2021)
Adam J. Shephard, Simon Graham, Raja Muhammad Saad Bashir, Mostafa Jahanifar, Hanya Mahmood, Syed Ali Khurram, Nasir M. Rajpoot
Simultaneous Nuclear Instance and Layer Segmentation in Oral Epithelial Dysplasia. CoRR (2021)
Navid Alemi Koohbanani, Mostafa Jahanifar, Neda Zamani Tajadin, Nasir M. Rajpoot
NuClick: A Deep Learning Framework for Interactive Segmentation of Microscopy Images. CoRR (2020)
Mostafa Jahanifar, Neda Zamani Tajeddin, Meisam Hasani, Babak Shekarchi, Kamran Azema
Automatic Recognition of the Supraspinatus Tendinopathy from Ultrasound Images using Convolutional Neural Networks. CoRR (2020)
Navid Alemi Koohbanani, Mostafa Jahanifar, Neda Zamani Tajadin, Nasir M. Rajpoot
NuClick: A deep learning framework for interactive segmentation of microscopic images. Medical Image Anal. 65 (2020)
Neeraj Kumar, Ruchika Verma, Deepak Anand, Yanning Zhou, Omer Fahri Onder, Efstratios Tsougenis, Hao Chen, Pheng-Ann Heng, Jiahui Li, Zhiqiang Hu, Yunzhi Wang, Navid Alemi Koohbanani, Mostafa Jahanifar, Neda Zamani Tajeddin, Ali Gooya, Nasir M. Rajpoot, Xuhua Ren, Sihang Zhou, Qian Wang, Dinggang Shen, Cheng-Kun Yang, Chi-Hung Weng, Wei-Hsiang Yu, Chao-Yuan Yeh, Shuang Yang, Shuoyu Xu, Pak-Hei Yeung, Peng Sun, Amirreza Mahbod, Gerald Schaefer, Isabella Ellinger, Rupert Ecker, Örjan Smedby, Chunliang Wang, Benjamin Chidester, That-Vinh Ton, Minh-Triet Tran, Jian Ma, Minh N. Do, Simon Graham, Quoc Dang Vu, Jin Tae Kwak, Akshaykumar Gunda, Raviteja Chunduri, Corey Hu, Xiaoyang Zhou, Dariush Lotfi, Reza Safdari, Antanas Kascenas, Alison O'Neil, Dennis Eschweiler, Johannes Stegmaier, Yanping Cui, Baocai Yin, Kailin Chen, Xinmei Tian, Philipp Grüning, Erhardt Barth, Elad Arbel, Itay Remer, Amir Ben-Dor, Ekaterina Sirazitdinova, Matthias Kohl, Stefan Braunewell, Yuexiang Li, Xinpeng Xie, Linlin Shen, Jun Ma, Krishanu Das Baksi, Mohammad Azam Khan, Jaegul Choo, Adrián Colomer, Valery Naranjo, Linmin Pei, Khan M. Iftekharuddin, Kaushiki Roy, Debotosh Bhattacharjee, Aníbal Pedraza, Maria Gloria Bueno, Sabarinathan Devanathan, Saravanan Radhakrishnan, Praveen Koduganty, Zihan Wu, Guanyu Cai, Xiaojie Liu, Yuqin Wang, Amit Sethi
A Multi-Organ Nucleus Segmentation Challenge. IEEE Trans. Medical Imaging 39 (5) (2020)
Jevgenij Gamper, Navid Alemi Koohbanani, Simon Graham, Mostafa Jahanifar, Syed Ali Khurram, Ayesha Azam, Katherine Hewitt, Nasir M. Rajpoot
PanNuke Dataset Extension, Insights and Baselines. CoRR (2020)
Navid Alemi Koohbanani, Mostafa Jahanifar, Ali Gooya, Nasir M. Rajpoot
Nuclear Instance Segmentation Using a Proposal-Free Spatially Aware Deep Learning Framework. MICCAI (1) (2019)
Mostafa Jahanifar, Neda Zamani Tajeddin, Babak Mohammadzadeh Asl, Ali Gooya
Supervised Saliency Map Driven Segmentation of Lesions in Dermoscopic Images. IEEE J. Biomed. Health Informatics 23 (2) (2019)
Mostafa Jahanifar, Navid Alemi Koohbanani, Nasir M. Rajpoot
NuClick: From Clicks in the Nuclei to Nuclear Boundaries. CoRR (2019)
Navid Alemi Koohbanani, Mostafa Jahanifar, Ali Gooya, Nasir M. Rajpoot
Nuclei Detection Using Mixture Density Networks. CoRR (2018)
Navid Alemi Koohbanani, Mostafa Jahanifar, Ali Gooya, Nasir M. Rajpoot
Nuclei Detection Using Mixture Density Networks. MLMI@MICCAI (2018)
Navid Alemi Koohbanani, Mostafa Jahanifar, Neda Zamani Tajeddin, Ali Gooya, Nasir M. Rajpoot
Leveraging Transfer Learning for Segmenting Lesions and their Attributes in Dermoscopy Images. CoRR (2018)
Mostafa Jahanifar, Neda Zamani Tajeddin, Ali Gooya, Babak Mohammadzadeh Asl
Segmentation of Lesions in Dermoscopy Images Using Saliency Map And Contour Propagation. CoRR (2017)