Robert Klopfleisch

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 59

Top Topics

Top Venues

Bildverarbeitung für die Medizin

Medical Image Anal.

Publications

Chloé Puget, Jonathan Ganz, Julian Ostermaier, Thomas Konrad, Eda Parlak, Christof Albert Bertram, Matti Kiupel, Katharina Breininger, Marc Aubreville, Robert Klopfleisch
Deep Learning model predicts the c-Kit-11 mutational status of canine cutaneous mast cell tumors by HE stained histological slides. CoRR (2024)
Jonathan Ganz, Chloé Puget, Jonas Ammeling, Eda Parlak, Matti Kiupel, Christof A. Bertram, Katharina Breininger, Robert Klopfleisch, Marc Aubreville
Assessment of Scanner Domain Shifts in Deep Multiple Instance Learning. Bildverarbeitung für die Medizin (2024)
Marc Aubreville, Frauke Wilm, Nikolas Stathonikos, Katharina Breininger, Taryn A. Donovan, Samir Jabari, Robert Klopfleisch, Mitko Veta, Jonathan Ganz, Jonas Ammeling, Paul J. van Diest, Christof A. Bertram
Abstract: Comprehensive Multi-domain Dataset for Mitotic Figure Detection. Bildverarbeitung für die Medizin (2024)
Marc Aubreville, Nikolas Stathonikos, Taryn A. Donovan, Robert Klopfleisch, Jonas Ammeling, Jonathan Ganz, Frauke Wilm, Mitko Veta, Samir Jabari, Markus Eckstein, Jonas Annuscheit, Christian Krumnow, Engin Bozaba, Sercan Çayir, Hongyan Gu, Xiang Anthony Chen, Mostafa Jahanifar, Adam Shephard, Satoshi Kondo, Satoshi Kasai, Sujatha Kotte, VG Saipradeep, Maxime W. Lafarge, Viktor H. Koelzer, Ziyue Wang, Yongbing Zhang, Sen Yang, Xiyue Wang, Katharina Breininger, Christof A. Bertram
Domain generalization across tumor types, laboratories, and species - Insights from the 2022 edition of the Mitosis Domain Generalization Challenge. Medical Image Anal. 94 (2024)
Jonathan Ganz, Christian Marzahl, Jonas Ammeling, Barbara Richter, Chloé Puget, Daniela Denk, Elena A. Demeter, Flaviu A. Tabaran, Gabriel Wasinger, Karoline Lipnik, Marco Tecilla, Matthew J. Valentine, Michael J. Dark, Niklas Abele, Pompei Bolfa, Ramona Erber, Robert Klopfleisch, Sophie Merz, Taryn A. Donovan, Samir Jabari, Christof A. Bertram, Katharina Breininger, Marc Aubreville
On the Value of PHH3 for Mitotic Figure Detection on H&E-stained Images. CoRR (2024)
Jonas Ammeling, Moritz Hecker, Jonathan Ganz, Taryn A. Donovan, Robert Klopfleisch, Christof A. Bertram, Katharina Breininger, Marc Aubreville
Automated Mitotic Index Calculation via Deep Learning and Immunohistochemistry. Bildverarbeitung für die Medizin (2024)
Christof A. Bertram, Christian Marzahl, Alexander Bartel, Jason Stayt, Federico Bonsembiante, Janet Beeler-Marfisi, Ann K. Barton, Ginevra Brocca, Maria E. Gelain, Agnes C. Gläsel, Kelly du Preez, Kristina Weiler, Christiane Weissenbacher-Lang, Katharina Breininger, Marc Aubreville, Andreas K. Maier, Robert Klopfleisch, Jenny Hill
Abstract: Cytologic Scoring of Equine Exercise-induced Pulmonary Hemorrhage - Performance of Human Experts and a Deep Learning. Bildverarbeitung für die Medizin (2024)
Ludwig M. Lausser, Christof A. Bertram, Robert Klopfleisch, Marc Aubreville
Limits of Human Expert Ensembles in Mitosis Multi-expert Ground Truth Generation. Bildverarbeitung für die Medizin (2023)
Frauke Wilm, Marco Fragoso, Christof A. Bertram, Nikolas Stathonikos, Mathias Öttl, Jingna Qiu, Robert Klopfleisch, Andreas K. Maier, Katharina Breininger, Marc Aubreville
Multi-scanner Canine Cutaneous Squamous Cell Carcinoma Histopathology Dataset. Bildverarbeitung für die Medizin (2023)
Frauke Wilm, Marco Fragoso, Christian Marzahl, Jingna Qiu, Chloé Puget, Laura Diehl, Christof A. Bertram, Robert Klopfleisch, Andreas K. Maier, Katharina Breininger, Marc Aubreville
Abstract: Pan-tumor CAnine CuTaneous Cancer Histology (CATCH) Dataset. Bildverarbeitung für die Medizin (2023)
Marc Aubreville, Nikolas Stathonikos, Taryn A. Donovan, Robert Klopfleisch, Jonathan Ganz, Jonas Ammeling, Frauke Wilm, Mitko Veta, Samir Jabari, Markus Eckstein, Jonas Annuscheit, Christian Krumnow, Engin Bozaba, Sercan Cayir, Hongyan Gu, Xiang 'Anthony' Chen, Mostafa Jahanifar, Adam Shephard, Satoshi Kondo, Satoshi Kasai, Sujatha Kotte, VG Saipradeep, Maxime W. Lafarge, Viktor H. Koelzer, Ziyue Wang, Yongbing Zhang, Sen Yang, Xiyue Wang, Katharina Breininger, Christof A. Bertram
Domain generalization across tumor types, laboratories, and species - insights from the 2022 edition of the Mitosis Domain Generalization Challenge. CoRR (2023)
Frauke Wilm, Marco Fragoso, Christof A. Bertram, Nikolas Stathonikos, Mathias Öttl, Jingna Qiu, Robert Klopfleisch, Andreas K. Maier, Katharina Breininger, Marc Aubreville
Multi-Scanner Canine Cutaneous Squamous Cell Carcinoma Histopathology Dataset. CoRR (2023)
Marc Aubreville, Nikolas Stathonikos, Christof A. Bertram, Robert Klopfleisch, Natalie ter Hoeve, Francesco Ciompi, Frauke Wilm, Christian Marzahl, Taryn A. Donovan, Andreas K. Maier, Mitko Veta, Katharina Breininger
Abstract: the MIDOG Challenge 2021 - Mitosis Domain Generalization in Histopathology Images. Bildverarbeitung für die Medizin (2023)
Jonathan Ganz, Karoline Lipnik, Jonas Ammeling, Barbara Richter, Chloé Puget, Eda Parlak, Laura Diehl, Robert Klopfleisch, Taryn A. Donovan, Matti Kiupel, Christof A. Bertram, Katharina Breininger, Marc Aubreville
Deep Learning-based Automatic Assessment of AgNOR-scores in Histopathology Images. Bildverarbeitung für die Medizin (2023)
Andreas Haghofer, Eda Parlak, Alexander Bartel, Taryn A. Donovan, Charles-Antoine Assenmacher, Pompei Bolfa, Michael J. Dark, Andrea Fuchs-Baumgartinger, Andrea Klang, Kathrin Jäger, Robert Klopfleisch, Sophie Merz, Barbara Richter, F. Yvonne Schulman, Jonathan Ganz, Josef Scharinger, Marc Aubreville, Stephan M. Winkler, Matti Kiupel, Christof A. Bertram
Nuclear Morphometry using a Deep Learning-based Algorithm has Prognostic Relevance for Canine Cutaneous Mast Cell Tumors. CoRR (2023)
Marc Aubreville, Nikolas Stathonikos, Christof A. Bertram, Robert Klopfleisch, Natalie ter Hoeve, Francesco Ciompi, Frauke Wilm, Christian Marzahl, Taryn A. Donovan, Andreas K. Maier, Jack Breen, Nishant Ravikumar, Youjin Chung, Jinah Park, Ramin Nateghi, Fattaneh Pourakpour, Rutger H. J. Fick, Saima Ben Hadj, Mostafa Jahanifar, Adam Shephard, Jakob Dexl, Thomas Wittenberg, Satoshi Kondo, Maxime W. Lafarge, Viktor H. Koelzer, Jingtang Liang, Yubo Wang, Xi Long, Jingxin Liu, Salar Razavi, April Khademi, Sen Yang, Xiyue Wang, Ramona Erber, Andrea Klang, Karoline Lipnik, Pompei Bolfa, Michael J. Dark, Gabriel Wasinger, Mitko Veta, Katharina Breininger
Mitosis domain generalization in histopathology images - The MIDOG challenge. Medical Image Anal. 84 (2023)
Frauke Wilm, Marco Fragoso, Christof A. Bertram, Nikolas Stathonikos, Mathias Öttl, Jingna Qiu, Robert Klopfleisch, Andreas Maier, Marc Aubreville, Katharina Breininger
Mind the Gap: Scanner-Induced Domain Shifts Pose Challenges for Representation Learning in Histopathology. ISBI (2023)
Frauke Wilm, Marco Fragoso, Christian Marzahl, Jingna Qiu, Christof A. Bertram, Robert Klopfleisch, Andreas K. Maier, Katharina Breininger, Marc Aubreville
Pan-Tumor CAnine cuTaneous Cancer Histology (CATCH) Dataset. CoRR (2022)
Marc Aubreville, Nikolas Stathonikos, Christof A. Bertram, Robert Klopfleisch, Natalie D. ter Hoeve, Francesco Ciompi, Frauke Wilm, Christian Marzahl, Taryn A. Donovan, Andreas K. Maier, Jack Breen, Nishant Ravikumar, Youjin Chung, Jinah Park, Ramin Nateghi, Fattaneh Pourakpour, Rutger H. J. Fick, Saima Ben Hadj, Mostafa Jahanifar, Nasir M. Rajpoot, Jakob Dexl, Thomas Wittenberg, Satoshi Kondo, Maxime W. Lafarge, Viktor H. Koelzer, Jingtang Liang, Yubo Wang, Xi Long, Jingxin Liu, Salar Razavi, April Khademi, Sen Yang, Xiyue Wang, Mitko Veta, Katharina Breininger
Mitosis domain generalization in histopathology images - The MIDOG challenge. CoRR (2022)
Sonja Kunzmann, Christian Marzahl, Felix Denzinger, Christof Bertram, Robert Klopfleisch, Katharina Breininger, Vincent Christlein, Andreas K. Maier
First Steps on Gamification of Lung Fluid Cells Annotations in the Flower Domain. Bildverarbeitung für die Medizin (2022)
Jonathan Ganz, Karoline Lipnik, Jonas Ammeling, Barbara Richter, Chloé Puget, Eda Parlak, Laura Diehl, Robert Klopfleisch, Taryn A. Donovan, Matti Kiupel, Christof A. Bertram, Katharina Breininger, Marc Aubreville
Deep Learning-Based Automatic Assessment of AgNOR-scores in Histopathology Images. CoRR (2022)
Frauke Wilm, Marco Fragoso, Christof A. Bertram, Nikolas Stathonikos, Mathias Öttl, Jingna Qiu, Robert Klopfleisch, Andreas K. Maier, Marc Aubreville, Katharina Breininger
Mind the Gap: Scanner-induced domain shifts pose challenges for representation learning in histopathology. CoRR (2022)
Luisa Theelke, Frauke Wilm, Christian Marzahl, Christof A. Bertram, Robert Klopfleisch, Andreas Maier, Marc Aubreville, Katharina Breininger
Iterative Cross-Scanner Registration for Whole Slide Images. ICCVW (2021)
Marc Aubreville, Christof A. Bertram, Christian Marzahl, Corinne Gurtner, Martina Dettwiler, Anja Schmidt, Florian Bartenschlager, Sophie Merz, Marco Fragoso, Olivia Kershaw, Robert Klopfleisch, Andreas Maier
Abstract: Deep Learning Algorithms Out-perform Veterinary Pathologists in Detecting the Mitotically Most Active Tumor Region. Bildverarbeitung für die Medizin (2021)
Christian Marzahl, Jenny Hill, Jason Stayt, Dorothee Bienzle, Lutz Welker, Frauke Wilm, Jörn Voigt, Marc Aubreville, Andreas K. Maier, Robert Klopfleisch, Katharina Breininger, Christof A. Bertram
Inter-Species Cell Detection: Datasets on pulmonary hemosiderophages in equine, human and feline specimens. CoRR (2021)
Christian Marzahl, Christof A. Bertram, Frauke Wilm, Jörn Voigt, Ann K. Barton, Robert Klopfleisch, Katharina Breininger, Andreas Maier, Marc Aubreville
Learning to be EXACT, Cell Detection for Asthma on Partially Annotated Whole Slide Images. CoRR (2021)
Marc Aubreville, Christof A. Bertram, Taryn A. Donovan, Christian Marzahl, Andreas Maier, Robert Klopfleisch
Abstract: A Completely Annotated Whole Slide Image Dataset of Canine Breast Cancer to Aid Human Breast Cancer Research. Bildverarbeitung für die Medizin (2021)
Christian Marzahl, Marc Aubreville, Christof A. Bertram, Jason Stayt, Anne-Katherine Jasensky, Florian Bartenschlager, Marco Fragoso, Ann K. Barton, Svenja Elsemann, Samir Jabari, Jens Krauth, Prathmesh Madhu, Jörn Voigt, Jenny Hill, Robert Klopfleisch, Andreas Maier
Abstract: Deep Learning-based Quantification of Pulmonary Hemosiderophages in Cytology Slides. Bildverarbeitung für die Medizin (2021)
Frauke Wilm, Christof A. Bertram, Christian Marzahl, Alexander Bartel, Taryn A. Donovan, Charles-Antoine Assenmacher, Kathrin Becker, Mark Bennett, Sarah Corner, Brieuc Cossic, Daniela Denk, Martina Dettwiler, Beatriz Garcia Gonzalez, Corinne Gurtner, Annabelle Heier, Annika Lehmbecker, Sophie Merz, Stephanie Plog, Anja Schmidt, Franziska Sebastian, Rebecca C. Smedley, Marco Tecilla, Tuddow Thaiwong, Katharina Breininger, Matti Kiupel, Andreas Maier, Robert Klopfleisch, Marc Aubreville
Influence of Inter-Annotator Variability on Automatic Mitotic Figure Assessment. Bildverarbeitung für die Medizin (2021)
Christian Marzahl, Christof A. Bertram, Frauke Wilm, Jörn Voigt, Ann K. Barton, Robert Klopfleisch, Katharina Breininger, Andreas Maier, Marc Aubreville
Cell Detection for Asthma on Partially Annotated Whole Slide Images - Learning to be EXACT. Bildverarbeitung für die Medizin (2021)
Christian Marzahl, Christof A. Bertram, Marc Aubreville, Anne Petrick, Kristina Weiler, Agnes C. Gläsel, Marco Fragoso, Sophie Merz, Florian Bartenschlager, Judith Hoppe, Alina Langenhagen, Anne-Katherine Jasensky, Jörn Voigt, Robert Klopfleisch, Andreas Maier
Abstract: Are Fast Labeling Methods Reliable? - A Case Study of Computer-aided Expert Annotations on Microscopy Slides. Bildverarbeitung für die Medizin (2021)
Christian Marzahl, Frauke Wilm, Franz F. Dressler, Lars Tharun, Sven Perner, Christof A. Bertram, Christine Kröger, Jörn Voigt, Robert Klopfleisch, Andreas K. Maier, Marc Aubreville, Katharina Breininger
Robust Quad-Tree based Registration on Whole Slide Images. COMPAY@MICCAI (2021)
Christof A. Bertram, Taryn A. Donovan, Marco Tecilla, Florian Bartenschlager, Marco Fragoso, Frauke Wilm, Christian Marzahl, Katharina Breininger, Andreas Maier, Robert Klopfleisch, Marc Aubreville
Dataset on Bi- and Multi-nucleated Tumor Cells in Canine Cutaneous Mast Cell Tumors. Bildverarbeitung für die Medizin (2021)
Sonja Kunzmann, Christian Marzahl, Felix Denzinger, Christof A. Bertram, Robert Klopfleisch, Katharina Breininger, Vincent Christlein, Andreas K. Maier
First steps on Gamification of Lung Fluid Cells Annotations in the Flower Domain. CoRR (2021)
Marc Aubreville, Christof Bertram, Mitko Veta, Robert Klopfleisch, Nikolas Stathonikos, Katharina Breininger, Natalie D. ter Hoeve, Francesco Ciompi, Andreas Maier
Quantifying the Scanner-Induced Domain Gap in Mitosis Detection. CoRR (2021)
Christof A. Bertram, Taryn A. Donovan, Marco Tecilla, Florian Bartenschlager, Marco Fragoso, Frauke Wilm, Christian Marzahl, Katharina Breininger, Andreas Maier, Robert Klopfleisch, Marc Aubreville
Dataset on Bi- and Multi-Nucleated Tumor Cells in Canine Cutaneous Mast Cell Tumors. CoRR (2021)
Christof A. Bertram, Marc Aubreville, Christian Marzahl, Andreas K. Maier, Robert Klopfleisch
Abstract: How Big is Big Enough? Bildverarbeitung für die Medizin (2020)
Christian Marzahl, Christof A. Bertram, Marc Aubreville, Anne Petrick, Kristina Weiler, Agnes C. Gläsel, Marco Fragoso, Sophie Merz, Florian Bartenschlager, Judith Hoppe, Alina Langenhagen, Anne-Katherine Jasensky, Jörn Voigt, Robert Klopfleisch, Andreas K. Maier
Are fast labeling methods reliable? A case study of computer-aided expert annotations on microscopy slides. CoRR (2020)
Frauke Wilm, Christof A. Bertram, Christian Marzahl, Alexander Bartel, Taryn A. Donovan, Charles-Antoine Assenmacher, Kathrin Becker, Mark Bennett, Sarah Corner, Brieuc Cossic, Daniela Denk, Martina Dettwiler, Beatriz Garcia Gonzalez, Corinne Gurtner, Annika Lehmbecker, Sophie Merz, Stephanie Plog, Anja Schmidt, Rebecca C. Smedley, Marco Tecilla, Tuddow Thaiwong, Katharina Breininger, Matti Kiupel, Andreas Maier, Robert Klopfleisch, Marc Aubreville
How Many Annotators Do We Need? - A Study on the Influence of Inter-Observer Variability on the Reliability of Automatic Mitotic Figure Assessment. CoRR (2020)
Christian Marzahl, Marc Aubreville, Christof A. Bertram, Stefan Gerlach, Jennifer Maier, Jörn Voigt, Jenny Hill, Robert Klopfleisch, Andreas K. Maier
Is Crowd-Algorithm Collaboration an Advanced Alternative to Crowd-Sourcing on Cytology Slides? Bildverarbeitung für die Medizin (2020)
Marc Aubreville, Christof A. Bertram, Samir Jabari, Christian Marzahl, Robert Klopfleisch, Andreas K. Maier
Inter-Species, Inter-Tissue Domain Adaptation for Mitotic Figure Assessment. Bildverarbeitung für die Medizin (2020)
Christof A. Bertram, Mitko Veta, Christian Marzahl, Nikolas Stathonikos, Andreas K. Maier, Robert Klopfleisch, Marc Aubreville
Are pathologist-defined labels reproducible? Comparison of the TUPAC16 mitotic figure dataset with an alternative set of labels. CoRR (2020)
Christian Marzahl, Christof A. Bertram, Marc Aubreville, Anne Petrick, Kristina Weiler, Agnes C. Gläsel, Marco Fragoso, Sophie Merz, Florian Bartenschlager, Judith Hoppe, Alina Langenhagen, Anne-Katherine Jasensky, Jörn Voigt, Robert Klopfleisch, Andreas Maier
Are Fast Labeling Methods Reliable? A Case Study of Computer-Aided Expert Annotations on Microscopy Slides. MICCAI (1) (2020)
Marc Aubreville, Christof A. Bertram, Taryn A. Donovan, Christian Marzahl, Andreas Maier, Robert Klopfleisch
Dogs as Model for Human Breast Cancer: A Completely Annotated Whole Slide Image Dataset. CoRR (2020)
Christof A. Bertram, Mitko Veta, Christian Marzahl, Nikolas Stathonikos, Andreas K. Maier, Robert Klopfleisch, Marc Aubreville
Are Pathologist-Defined Labels Reproducible? Comparison of the TUPAC16 Mitotic Figure Dataset with an Alternative Set of Labels. iMIMIC/MIL3ID/LABELS@MICCAI (2020)
Christian Marzahl, Marc Aubreville, Christof A. Bertram, Jennifer Maier, Christian Bergler, Christine Kröger, Jörn Voigt, Robert Klopfleisch, Andreas K. Maier
EXACT: A collaboration toolset for algorithm-aided annotation of almost everything. CoRR (2020)
Christian Marzahl, Marc Aubreville, Christof A. Bertram, Stefan Gerlach, Jennifer Maier, Jörn Voigt, Jenny Hill, Robert Klopfleisch, Andreas K. Maier
Fooling the Crowd with Deep Learning-based Methods. CoRR (2019)
Marc Aubreville, Christof A. Bertram, Robert Klopfleisch, Andreas Maier
Field of Interest Proposal for Augmented Mitotic Cell Count: Comparison of Two Convolutional Networks. BIOIMAGING (2019)
Marc Aubreville, Christof A. Bertram, Robert Klopfleisch, Andreas K. Maier
Augmented Mitotic Cell Count Using Field of Interest Proposal. Bildverarbeitung für die Medizin (2019)
Christian Marzahl, Marc Aubreville, Christof A. Bertram, Jason Stayt, Anne-Katherine Jasensky, Florian Bartenschlager, Marco Fragoso-Garcia, Ann K. Barton, Svenja Elsemann, Samir Jabari, Jens Krauth, Prathmesh Madhu, Jörn Voigt, Jenny Hill, Robert Klopfleisch, Andreas K. Maier
Deep Learning-Based Quantification of Pulmonary Hemosiderophages in Cytology Slides. CoRR (2019)
Marc Aubreville, Christof A. Bertram, Christian Marzahl, Corinne Gurtner, Martina Dettwiler, Anja Schmidt, Florian Bartenschlager, Sophie Merz, Marco Fragoso, Olivia Kershaw, Robert Klopfleisch, Andreas Maier
Field of Interest Prediction for Computer-Aided Mitotic Count. CoRR (2019)
Marc Aubreville, Christof A. Bertram, Samir Jabari, Christian Marzahl, Robert Klopfleisch, Andreas K. Maier
Learning New Tricks from Old Dogs - Inter-Species, Inter-Tissue Domain Adaptation for Mitotic Figure Assessment. CoRR (2019)
Marc Aubreville, Christof A. Bertram, Robert Klopfleisch, Andreas K. Maier
Augmented Mitotic Cell Count using Field Of Interest Proposal. CoRR (2018)
Marc Aubreville, Christof A. Bertram, Robert Klopfleisch, Andreas K. Maier
Field Of Interest Proposal for Augmented Mitotic Cell Count: Comparison of two Convolutional Networks. CoRR (2018)
Maximilian Krappmann, Marc Aubreville, Andreas K. Maier, Christof Bertram, Robert Klopfleisch
Classification of Mitotic Cells - Potentials Beyond the Limits of Small Data Sets. Bildverarbeitung für die Medizin (2018)
Marc Aubreville, Christof Bertram, Robert Klopfleisch, Andreas K. Maier
SlideRunner - A Tool for Massive Cell Annotations in Whole Slide Images. Bildverarbeitung für die Medizin (2018)
Marc Aubreville, Christof Bertram, Robert Klopfleisch, Andreas K. Maier
SlideRunner - A Tool for Massive Cell Annotations in Whole Slide Images. CoRR (2018)
Marc Aubreville, Maximilian Krappmann, Christof Bertram, Robert Klopfleisch, Andreas K. Maier
A Guided Spatial Transformer Network for Histology Cell Differentiation. CoRR (2017)
Marc Aubreville, Maximilian Krappmann, Christof Bertram, Robert Klopfleisch, Andreas K. Maier
A Guided Spatial Transformer Network for Histology Cell Differentiation. VCBM (2017)