Allen R. Tannenbaum

ORCID

Publication Activity (10 Years)

Years Active: 1986-2024
Publications (10 Years): 58

Top Venues

CoRR

Medical Imaging: Image Processing

IEEE Trans. Autom. Control.

CDC

Publications

Jiening Zhu, Anh Phong Tran, Joseph O. Deasy, Allen R. Tannenbaum
Multi-omic integrated curvature study on pan-cancer genomic data. Math. Control. Signals Syst. 36 (1) (2024)
Jiening Zhu, Harini Veeraraghavan, Jue Jiang, Jung Hun Oh, Larry Norton, Joseph O. Deasy, Allen R. Tannenbaum
Wasserstein HOG: Local Directionality Extraction via Optimal Transport. IEEE Trans. Medical Imaging 43 (3) (2024)
Xinan Chen, Anh Phong Tran, Rena Elkin, Helene Benveniste, Allen R. Tannenbaum
Visualizing Fluid Flows via Regularized Optimal Mass Transport with Applications to Neuroscience. J. Sci. Comput. 97 (1) (2023)
Xinan Chen, Helene Benveniste, Allen R. Tannenbaum
Unbalanced Regularized Optimal Mass Transport with Applications to Fluid Flows in the Brain. CoRR (2023)
Jiening Zhu, Jung Hun Oh, Anish K. Simhal, Rena Elkin, Larry Norton, Joseph O. Deasy, Allen R. Tannenbaum
Geometric graph neural networks on multi-omics data to predict cancer survival outcomes. Comput. Biol. Medicine 163 (2023)
Anqi Dong, Tryphon T. Georgiou, Allen R. Tannenbaum
Data Assimilation for Sign-indefinite Priors: A generalization of Sinkhorn's algorithm. CoRR (2023)
Daniel Grange, Mohammad Al-Jarrah, Ricardo Baptista, Amirhossein Taghvaei, Tryphon T. Georgiou, Sean Phillips, Allen R. Tannenbaum
Computational Optimal Transport and Filtering on Riemannian Manifolds. IEEE Control. Syst. Lett. 7 (2023)
Jung Hun Oh, Rena Elkin, Anish Kumar Simhal, Jiening Zhu, Joseph O. Deasy, Allen R. Tannenbaum
Optimal Transport for Kernel Gaussian Mixture Models. CoRR (2023)
Anqi Dong, Tryphon T. Georgiou, Allen R. Tannenbaum
Negative probabilities in Gene Regulatory Networks. CoRR (2023)
Shreeraj Jadhav, Mahsa Torkaman, Allen R. Tannenbaum, Saad Nadeem, Arie E. Kaufman
Volume Exploration Using Multidimensional Bhattacharyya Flow. IEEE Trans. Vis. Comput. Graph. 29 (3) (2023)
Maryam Pouryahya, Jung Hun Oh, Pedram Javanmard, James C. Mathews, Zehor Belkhatir, Joseph O. Deasy, Allen R. Tannenbaum
aWCluster: A Novel Integrative Network-Based Clustering of Multiomics for Subtype Analysis of Cancer Data. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (3) (2022)
Zehor Belkhatir, Raúl San José Estépar, Allen R. Tannenbaum
Wasserstein-based texture analysis in radiomic studies. Comput. Medical Imaging Graph. 102 (2022)
Xinan Chen, Anh Phong Tran, Rena Elkin, Helene Benveniste, Allen R. Tannenbaum
Visualizing fluid flows via regularized optimal mass transport with applications to neuroscience. CoRR (2022)
Corey Weistuch, Jiening Zhu, Joseph O. Deasy, Allen R. Tannenbaum
The maximum entropy principle for compositional data. BMC Bioinform. 23 (1) (2022)
Jung Hun Oh, Wookjin Choi, Euiseong Ko, Mingon Kang, Allen R. Tannenbaum, Joseph O. Deasy
PathCNN: interpretable convolutional neural networks for survival prediction and pathway analysis applied to glioblastoma. Bioinform. 37 (Supplement) (2021)
Wookjin Choi, Saad Nadeem, Sadegh R. Alam, Joseph O. Deasy, Allen R. Tannenbaum, Wei Lu
Reproducible and Interpretable Spiculation Quantification for Lung Cancer Screening. Comput. Methods Programs Biomed. 200 (2021)
Zehor Belkhatir, Michele Pavon, James C. Mathews, Maryam Pouryahya, Joseph O. Deasy, Larry Norton, Allen R. Tannenbaum
Stochastic Norton-Simon-Massagué Tumor Growth Modeling: Controlled and Mixed-Effect Uncontrolled Analysis. IEEE Trans. Control. Syst. Technol. 29 (2) (2021)
Yongxin Chen, Tryphon T. Georgiou, Michele Pavon, Allen R. Tannenbaum
Relaxed Schrödinger Bridges and Robust Network Routing. IEEE Trans. Control. Netw. Syst. 7 (2) (2020)
Saad Nadeem, Travis Hollmann, Allen R. Tannenbaum
Multimarginal Wasserstein Barycenter for Stain Normalization and Augmentation. MICCAI (5) (2020)
Rena Elkin, Saad Nadeem, Hedok Lee, Helene Benveniste, Allen R. Tannenbaum
Fisher-Rao Regularized Transport Analysis of the Glymphatic System and Waste Drainage. MICCAI (7) (2020)
Saad Nadeem, Travis Hollmann, Allen R. Tannenbaum
Multimarginal Wasserstein Barycenter for Stain Normalization and Augmentation. CoRR (2020)
Jiening Zhu, Rena Elkin, Jung Hun Oh, Joseph O. Deasy, Allen R. Tannenbaum
A Vectorial Approach to Unbalanced Optimal Mass Transport. IEEE Access 8 (2020)
Jiening Zhu, Kaiming Xu, Allen R. Tannenbaum
Optimal transport for vector Gaussian mixture models. CoRR (2020)
Yongxin Chen, Tryphon T. Georgiou, Allen R. Tannenbaum
Stochastic Control and Nonequilibrium Thermodynamics: Fundamental Limits. IEEE Trans. Autom. Control. 65 (7) (2020)
Jung Hun Oh, Maryam Pouryahya, Aditi Iyer, Aditya P. Apte, Joseph O. Deasy, Allen R. Tannenbaum
A novel kernel Wasserstein distance on Gaussian measures: An application of identifying dental artifacts in head and neck computed tomography. Comput. Biol. Medicine 120 (2020)
Yongxin Chen, Tryphon T. Georgiou, Allen R. Tannenbaum
Probabilistic Kernel Support Vector Machines. CoRR (2019)
Zehor Belkhatir, Michele Pavon, James C. Mathews, Maryam Pouryahya, Joseph O. Deasy, Larry Norton, Allen R. Tannenbaum
Controlled and Uncontrolled Stochastic Norton-Simon-Massagué Tumor Growth Models. CDC (2019)
Yongxin Chen, Tryphon T. Georgiou, Allen R. Tannenbaum
Optimal Transport for Gaussian Mixture Models. IEEE Access 7 (2019)
Jung Hun Oh, Maryam Pouryahya, Aditi Iyer, Aditya P. Apte, Allen R. Tannenbaum, Joseph O. Deasy
Kernel Wasserstein Distance. CoRR (2019)
Yongxin Chen, Tryphon T. Georgiou, Allen R. Tannenbaum
Stochastic control and non-equilibrium thermodynamics: fundamental limits. CoRR (2018)
Stanley L. Tuznik, Peter J. Olver, Allen R. Tannenbaum
Affine Differential Invariants for Invariant Feature Point Detection. CoRR (2018)
Kaoru Yamamoto, Yongxin Chen, Lipeng Ning, Tryphon T. Georgiou, Allen R. Tannenbaum
Regularization and Interpolation of Positive Matrices. IEEE Trans. Autom. Control. 63 (4) (2018)
Wookjin Choi, Saad Nadeem, Sadegh Riyahi, Joseph O. Deasy, Allen R. Tannenbaum, Wei Lu
Interpretable Spiculation Quantification for Lung Cancer Screening. CoRR (2018)
Rena Elkin, Saad Nadeem, Eldad Haber, Klara Steklova, Hedok Lee, Helene Benveniste, Allen R. Tannenbaum
GlymphVIS: Visualizing Glymphatic Transport Pathways Using Regularized Optimal Transport. MICCAI (1) (2018)
Mahsa Torkaman, Romeil Sandhu, Allen R. Tannenbaum
Extraction of breast lesions from ultrasound imagery: Bhattacharyya gradient flow approach. Medical Imaging: Image Processing (2018)
Yongxin Chen, Tryphon T. Georgiou, Allen R. Tannenbaum
Matrix Optimal Mass Transport: A Quantum Mechanical Approach. IEEE Trans. Autom. Control. 63 (8) (2018)
Rena Elkin, Saad Nadeem, Eldad Haber, Klara Steklova, Hedok Lee, Helene Benveniste, Allen R. Tannenbaum
GlymphVIS: Visualizing Glymphatic Transport Pathways Using Regularized Optimal Transport. CoRR (2018)
Wookjin Choi, Saad Nadeem, Sadegh Riyahi, Joseph O. Deasy, Allen R. Tannenbaum, Wei Lu
Interpretable Spiculation Quantification for Lung Cancer Screening. ShapeMI@MICCAI (2018)
Liangjia Zhu, Peter Karasev, Ivan Kolesov, Romeil Sandhu, Allen R. Tannenbaum
Guiding Image Segmentation on the Fly: Interactive Segmentation From a Feedback Control Perspective. IEEE Trans. Autom. Control. 63 (10) (2018)
Yongxin Chen, Tryphon T. Georgiou, Michele Pavon, Allen R. Tannenbaum
Efficient Robust Routing for Single Commodity Network Flows. IEEE Trans. Autom. Control. 63 (7) (2018)
Yongxin Chen, Tryphon T. Georgiou, Allen R. Tannenbaum
Vector-Valued Optimal Mass Transport. SIAM J. Appl. Math. 78 (3) (2018)
Yongxin Chen, Eldad Haber, Kaoru Yamamoto, Tryphon T. Georgiou, Allen R. Tannenbaum
An Efficient Algorithm for Matrix-Valued and Vector-Valued Optimal Mass Transport. J. Sci. Comput. 77 (1) (2018)
Yongxin Chen, Eldad Haber, Kaoru Yamamoto, Tryphon T. Georgiou, Allen R. Tannenbaum
An Efficient Algorithm for Matrix-Valued and Vector-Valued Optimal Mass Transport. CoRR (2017)
Naiyun Zhou, Xiaxia Yu, Tianhao Zhao, Si Wen, Fusheng Wang, Wei Zhu, Tahsin M. Kurç, Allen R. Tannenbaum, Joel H. Saltz, Yi Gao
Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis. Medical Imaging: Digital Pathology (2017)
Mahsa Torkaman, Liangjia Zhu, Peter Karasev, Allen R. Tannenbaum
Sulci segmentation using geometric active contours. Medical Imaging: Image Processing (2017)
Yongxin Chen, Tryphon T. Georgiou, Allen R. Tannenbaum
Optimal transport for Gaussian mixture models. CoRR (2017)
Vadim Ratner, Yi Gao, Hedok Lee, Rena Elkin, Maiken Nedergaard, Helene Benveniste, Allen R. Tannenbaum
Cerebrospinal and interstitial fluid transport via the glymphatic pathway modeled by optimal mass transport. NeuroImage 152 (2017)
Yongxin Chen, Tryphon T. Georgiou, Lipeng Ning, Allen R. Tannenbaum
Matricial Wasserstein-1 Distance. IEEE Control. Syst. Lett. 1 (1) (2017)
Yongxin Chen, Tryphon T. Georgiou, Michele Pavon, Allen R. Tannenbaum
Robust Transport Over Networks. IEEE Trans. Autom. Control. 62 (9) (2017)
Yongxin Chen, Tryphon T. Georgiou, Michele Pavon, Allen R. Tannenbaum
A new approach to robust transportation over networks. CDC (2016)
Liangjia Zhu, Peter Karasev, Ivan Kolesov, Romeil Sandhu, Allen R. Tannenbaum
Interactive Image Segmentation From A Feedback Control Perspective. CoRR (2016)
Romeil Sandhu, Sarah Tannenbaum, Tryphon T. Georgiou, Allen R. Tannenbaum
Geometry of correlation networks for studying the biology of cancer. CDC (2016)
Yi Gao, William Liu, Shipra Arjun, Liangjia Zhu, Vadim Ratner, Tahsin M. Kurç, Joel H. Saltz, Allen R. Tannenbaum
Multi-scale learning based segmentation of glands in digital colonrectal pathology images. Medical Imaging: Digital Pathology (2016)
Yongxin Chen, Jung Hun Oh, Romeil Sandhu, Sangkyu Lee, Joseph O. Deasy, Allen R. Tannenbaum
Transcriptional responses to ultraviolet and ionizing radiation: An approach based on graph curvature. BIBM (2016)
Yi Gao, Vadim Ratner, Liangjia Zhu, Tammy Diprima, Tahsin M. Kurç, Allen R. Tannenbaum, Joel H. Saltz
Hierarchical nucleus segmentation in digital pathology images. Medical Imaging: Digital Pathology (2016)
Ivan Kolesov, Jehoon Lee, Gregory Sharp, Patricio A. Vela, Allen R. Tannenbaum
A Stochastic Approach to Diffeomorphic Point Set Registration with Landmark Constraints. IEEE Trans. Pattern Anal. Mach. Intell. 38 (2) (2016)
Yongxin Chen, Tryphon T. Georgiou, Allen R. Tannenbaum
Transport Distance on Graphs and Vector-Valued Optimal Mass Transport. CoRR (2016)
Yongxin Chen, Tryphon T. Georgiou, Michele Pavon, Allen R. Tannenbaum
Robust transport over networks. CoRR (2016)
Lipeng Ning, Tryphon T. Georgiou, Allen R. Tannenbaum
On Matrix-Valued Monge-Kantorovich Optimal Mass Transport. IEEE Trans. Autom. Control. 60 (2) (2015)
Liangjia Zhu, Ivan Kolesov, Vadim Ratner, Peter Karasev, Allen R. Tannenbaum
Interactive image segmentation framework based on control theory. Medical Imaging: Image Processing (2015)
Vadim Ratner, Liangjia Zhu, Ivan Kolesov, Maiken Nedergaard, Helene Benveniste, Allen R. Tannenbaum
Optimal-mass-transfer-based estimation of glymphatic transport in living brain. Medical Imaging: Image Processing (2015)
Lipeng Ning, Tryphon T. Georgiou, Allen R. Tannenbaum, Stephen P. Boyd
Linear Models Based on Noisy Data and the Frisch Scheme. SIAM Rev. 57 (2) (2015)
Yi Gao, Liangjia Zhu, Joshua Cates, Rob S. MacLeod, Sylvain Bouix, Allen R. Tannenbaum
A Kalman Filtering Perspective for Multiatlas Segmentation. SIAM J. Imaging Sci. 8 (2) (2015)
Yi Gao, Liangjia Zhu, Isaiah Norton, Nathalie Y. R. Agar, Allen R. Tannenbaum
Reconstruction and feature selection for desorption electrospray ionization mass spectroscopy imagery. Medical Imaging: Image-Guided Procedures (2014)
Yi Gao, Liangjia Zhu, Sylvain Bouix, Allen R. Tannenbaum
Interpolation of longitudinal shape and image data via optimal mass transport. Medical Imaging: Image Processing (2014)
Arie Nakhmani, Ron Kikinis, Allen R. Tannenbaum
MRI brain tumor segmentation and necrosis detection using adaptive Sobolev snakes. Medical Imaging: Image Processing (2014)
Yi Gao, Allen R. Tannenbaum, Sylvain Bouix
A framework for joint image-and-shape analysis. Medical Imaging: Image Processing (2014)
Arie Nakhmani, Amit Surana, Allen R. Tannenbaum
Macroscopic analysis of crowd motion in video sequences. CDC (2014)
Liangjia Zhu, Yi Gao, Vikram V. Appia, Anthony J. Yezzi, Chesnal D. Arepalli, Tracy L. Faber, Arthur E. Stillman, Allen R. Tannenbaum
A Complete System for Automatic Extraction of Left Ventricular Myocardium From CT Images Using Shape Segmentation and Contour Evolution. IEEE Trans. Image Process. 23 (3) (2014)
Lipeng Ning, Tryphon T. Georgiou, Allen R. Tannenbaum
Matrix-valued Monge-Kantorovich Optimal Mass Transport CoRR (2013)
Lipeng Ning, Tryphon T. Georgiou, Allen R. Tannenbaum, Stephen P. Boyd
Linear models based on noisy data and the Frisch scheme CoRR (2013)
Ivan Kolesov, Jehoon Lee, Patricio A. Vela, Allen R. Tannenbaum
Stochastic image registration with user constraints. Medical Imaging: Image Processing (2013)
Ivan Kolesov, Jehoon Lee, Patricio A. Vela, Allen R. Tannenbaum
A stochastic approach for non-rigid image registration. Image Processing: Algorithms and Systems (2013)
Arie Nakhmani, Allen R. Tannenbaum
A new distance measure based on generalized Image Normalized Cross-Correlation for robust video tracking and image recognition. Pattern Recognit. Lett. 34 (3) (2013)
Amit Surana, Arie Nakhmani, Allen R. Tannenbaum
Anomaly detection in videos: A dynamical systems approach. CDC (2013)
Peter Karasev, Patricio A. Vela, Allen R. Tannenbaum
IMU-compensated image segmentation for improved vision-based control performance. SysCon (2013)
Yifei Lou, Andrei Irimia, Patricio A. Vela, Micah C. Chambers, John D. Van Horn, Paul M. Vespa, Allen R. Tannenbaum
Multimodal Deformable Registration of Traumatic Brain Injury MR Volumes via the Bhattacharyya Distance. IEEE Trans. Biomed. Eng. 60 (9) (2013)
Yifei Lou, Tianye Niu, Xun Jia, Patricio A. Vela, Lei Zhu, Allen R. Tannenbaum
Joint CT/CBCT deformable registration and CBCT enhancement for cancer radiotherapy. Medical Image Anal. 17 (3) (2013)
Martin Mueller, Peter Karasev, Ivan Kolesov, Allen R. Tannenbaum
Optical Flow Estimation for Flame Detection in Videos. IEEE Trans. Image Process. 22 (7) (2013)
Lipeng Ning, Tryphon T. Georgiou, Allen R. Tannenbaum
Matrix-valued Monge-Kantorovich optimal mass transport. CDC (2013)
Jehoon Lee, Romeil Sandhu, Allen R. Tannenbaum
Particle filters and occlusion handling for rigid 2D-3D pose tracking. Comput. Vis. Image Underst. 117 (8) (2013)
Liangjia Zhu, Yi Gao, Vikram V. Appia, Anthony J. Yezzi, Chesnal D. Arepalli, Tracy L. Faber, Arthur E. Stillman, Allen R. Tannenbaum
Automatic Delineation of the Myocardial Wall From CT Images Via Shape Segmentation and Variational Region Growing. IEEE Trans. Biomed. Eng. 60 (10) (2013)
Liangjia Zhu, Yi Gao, Anthony J. Yezzi, Allen R. Tannenbaum
Automatic Segmentation of the Left Atrium From MR Images via Variational Region Growing With a Moments-Based Shape Prior. IEEE Trans. Image Process. 22 (12) (2013)
Peter Karasev, Ivan Kolesov, Karl D. Fritscher, Patricio A. Vela, Phillip Mitchell, Allen R. Tannenbaum
Interactive Medical Image Segmentation Using PDE Control of Active Contours. IEEE Trans. Medical Imaging 32 (11) (2013)
Yi Gao, Sylvain Bouix, Martha Elizabeth Shenton, Allen R. Tannenbaum
Sparse Texture Active Contour. IEEE Trans. Image Process. 22 (10) (2013)
Yi Gao, Benjamin Corn, Dan Schifter, Allen R. Tannenbaum
Multiscale 3D shape representation and segmentation with applications to hippocampal/caudate extraction from brain MRI. Medical Image Anal. 16 (2) (2012)
Behnood Gholami, James M. Bailey, Wassim M. Haddad, Allen R. Tannenbaum
Clinical Decision Support and Closed-Loop Control for Cardiopulmonary Management and Intensive Care Unit Sedation Using Expert Systems. IEEE Trans. Control. Syst. Technol. 20 (5) (2012)
Yi Gao, Yogesh Rathi, Sylvain Bouix, Allen R. Tannenbaum
Filtering in the Diffeomorphism Group and the Registration of Point Sets. IEEE Trans. Image Process. 21 (10) (2012)
Liangjia Zhu, Yi Gao, Anthony J. Yezzi, Robert S. MacLeod, Joshua Cates, Allen R. Tannenbaum
Automatic segmentation of the left atrium from MRI images using salient feature and contour evolution. EMBC (2012)
Arie Nakhmani, Allen R. Tannenbaum
Self-Crossing Detection and Location for Parametric Active Contours. IEEE Trans. Image Process. 21 (7) (2012)
Yi Gao, Ron Kikinis, Sylvain Bouix, Martha Elizabeth Shenton, Allen R. Tannenbaum
A 3D interactive multi-object segmentation tool using local robust statistics driven active contours. Medical Image Anal. 16 (6) (2012)
Romeil Sandhu, Ayelet Dominitz, Yi Gao, Allen R. Tannenbaum
Volumetric Mapping of Genus Zero Objects via Mass Preservation CoRR (2012)
Behnood Gholami, Isaiah Norton, Allen R. Tannenbaum, Nathalie Y. R. Agar
Recursive feature elimination for brain tumor classification using desorption electrospray ionization mass spectrometry imaging. EMBC (2012)
Liangjia Zhu, Yi Gao, Vandana Mohan, Arthur E. Stillman, Tracy L. Faber, Allen R. Tannenbaum
Estimation of myocardial volume at risk from CT angiography. Medical Imaging: Computer-Aided Diagnosis (2011)
Xavier Le Faucheur, Eli Hershkovitz, Rina Tannenbaum, Allen R. Tannenbaum
Nonparametric Clustering for Studying RNA Conformations. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (6) (2011)
Peter Karasev, Ivan Kolesov, Karol Chudy, Allen R. Tannenbaum, Grant Muller, John W. Xerogeanes
Interactive MRI segmentation with controlled active vision. CDC/ECC (2011)
Arie Nakhmani, Allen R. Tannenbaum
Particle Filtering with Region-based Matching for Tracking of Partially Occluded and Scaled Targets. SIAM J. Imaging Sci. 4 (1) (2011)
Jehoon Lee, Peter Karasev, Liangjia Zhu, Allen R. Tannenbaum
Human Body Tracking and Joint Angle Estimation from Mobile-phone Video for Clinical Analysis. MVA (2011)
Yi Gao, Allen R. Tannenbaum
Combining atlas and active contour for automatic 3D medical image segmentation. ISBI (2011)
Guy Nir, Allen R. Tannenbaum
Temporal registration of partial data using particle filtering. ICIP (2011)

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Publication Activity (10 Years)

Top Topics

Top Venues

Allen R. Tannenbaum