David J. Foran

Publication Activity (10 Years)

Years Active: 1996-2024
Publications (10 Years): 30

Top Topics

Neural Network Structure

Histopathology Images

Top Venues

IEEE Trans. Biomed. Eng.

Publications

Weiting Gao, Xiangyu Gao, Wenjin Chen, David J. Foran, Yi Chen
BioReX: Biomarker Information Extraction Inspired by Aspect-Based Sentiment Analysis. PKDD (4) (2024)
Xiao Qi, David J. Foran, John L. Nosher, Ilker Hacihaliloglu
Multi-Scale Feature Fusion using Parallel-Attention Block for COVID-19 Chest X-ray Diagnosis. CoRR (2023)
Xiao Qi, David J. Foran, John L. Nosher, Ilker Hacihaliloglu
Multi-Feature Vision Transformer via Self-Supervised Representation Learning for Improvement of COVID-19 Diagnosis. MILLanD@MICCAI (2022)
Xiao Qi, David J. Foran, John L. Nosher, Ilker Hacihaliloglu
Multi-Feature Vision Transformer via Self-Supervised Representation Learning for Improvement of COVID-19 Diagnosis. CoRR (2022)
Xiao Qi, Lloyd G. Brown, David J. Foran, John L. Nosher, Ilker Hacihaliloglu
Chest X-ray image phase features for improved diagnosis of COVID-19 using convolutional neural network. Int. J. Comput. Assist. Radiol. Surg. 16 (2) (2021)
Xiao Qi, David J. Foran, John L. Nosher, Ilker Hacihaliloglu
Multi-Feature Semi-Supervised Learning for COVID-19 Diagnosis from Chest X-Ray Images. MLMI@MICCAI (2021)
Hui Che, Lloyd G. Brown, David J. Foran, John L. Nosher, Ilker Hacihaliloglu
Liver disease classification from ultrasound using multi-scale CNN. Int. J. Comput. Assist. Radiol. Surg. 16 (9) (2021)
Hui Che, Sumana Ramanathan, David J. Foran, John L. Nosher, Vishal M. Patel, Ilker Hacihaliloglu
Realistic Ultrasound Image Synthesis for Improved Classification of Liver Disease. ASMUS@MICCAI (2021)
Hui Che, Sumana Ramanathan, David J. Foran, John L. Nosher, Vishal M. Patel, Ilker Hacihaliloglu
Realistic Ultrasound Image Synthesis for Improved Classification of Liver Disease. CoRR (2021)
Xiangyu Gao, Jinhe Shi, Wenjin Chen, Nancy Sazo, Huiqi Chu, Evita T. Sadimin, David J. Foran, Yi Chen
CBEx: A Hybrid Approach for Cancer Biomarker Extraction. BIBM (2020)
Andreas S. Panayides, Amir A. Amini, Nenad D. Filipovic, Ashish Sharma, Sotirios A. Tsaftaris, Alistair A. Young, David J. Foran, Nhan Do, Spyretta Golemati, Tahsin M. Kurç, Kun Huang, Konstantina S. Nikita, Ben P. Veasey, Michalis E. Zervakis, Joel H. Saltz, Constantinos S. Pattichis
AI in Medical Imaging Informatics: Current Challenges and Future Directions. IEEE J. Biomed. Health Informatics 24 (7) (2020)
Xiao Qi, Lloyd G. Brown, David J. Foran, Ilker Hacihaliloglu
Chest X-ray Image Phase Features for Improved Diagnosis of COVID-19 Using Convolutional Neural Network. CoRR (2020)
Jian Ren, Zhe Li, Jianchao Yang, Ning Xu, Tianbao Yang, David J. Foran
EIGEN: Ecologically-Inspired GENetic Approach for Neural Network Structure Searching From Scratch. CVPR (2019)
Le Hou, Vu Nguyen, Ariel B. Kanevsky, Dimitris Samaras, Tahsin M. Kurç, Tianhao Zhao, Rajarsi R. Gupta, Yi Gao, Wenjin Chen, David J. Foran, Joel H. Saltz
Sparse autoencoder for unsupervised nucleus detection and representation in histopathology images. Pattern Recognit. 86 (2019)
Jian Ren, Ilker Hacihaliloglu, Eric A. Singer, David J. Foran, Xin Qi
Adversarial Domain Adaptation for Classification of Prostate Histopathology Whole-Slide Images. CoRR (2018)
Kihan Park, Wenjin Chen, Marina A. Chekmareva, David J. Foran, Jaydev P. Desai
Electromechanical Coupling Factor of Breast Tissue as a Biomarker for Breast Cancer. IEEE Trans. Biomed. Eng. 65 (1) (2018)
Jian Ren, Jianchao Yang, Ning Xu, David J. Foran
Factorized Adversarial Networks for Unsupervised Domain Adaptation. CoRR (2018)
Jian Ren, Ilker Hacihaliloglu, Eric A. Singer, David J. Foran, Xin Qi
Adversarial Domain Adaptation for Classification of Prostate Histopathology Whole-Slide Images. MICCAI (2) (2018)
Jian Ren, Zhe Li, Jianchao Yang, Ning Xu, Tianbao Yang, David J. Foran
EIGEN: Ecologically-Inspired GENetic Approach for Neural Network Structure Searching. CoRR (2018)
Esma Yildirim, David J. Foran
Parallel Versus Distributed Data Access for Gigapixel-Resolution Histology Images: Challenges and Opportunities. IEEE J. Biomed. Health Informatics 21 (4) (2017)
Jian Ren, Evita T. Sadimin, David J. Foran, Xin Qi
Computer aided analysis of prostate histopathology images to support a refined Gleason grading system. Medical Imaging: Image Processing (2017)
Jian Ren, Xiaohui Shen, Zhe L. Lin, Radomír Mech, David J. Foran
Personalized Image Aesthetics. ICCV (2017)
Daihou Wang, Eun-Sung Jung, Rajkumar Kettimuthu, Ian T. Foster, David J. Foran, Manish Parashar
Supporting Real-Time Jobs on the IBM Blue Gene/Q: Simulation-Based Study. JSSPP (2017)
Hardik J. Pandya, Kihan Park, Wenjin Chen, Lauri A. Goodell, David J. Foran, Jaydev P. Desai
Toward a Portable Cancer Diagnostic Tool Using a Disposable MEMS-Based Biochip. IEEE Trans. Biomed. Eng. 63 (7) (2016)
Yan Wu, Emmanuel Zachariah, Judith Amorosa, Anjani Naidu, Mina L. Labib, Jamil Shaikh, Donna Eckstein, Sinae Kim, John E. Langenfeld, Joseph Aisner, John L. Nosher, Robert S. DiPaola, David J. Foran
A Support Vector Machine based Prediction Model for Discrimination of Malignant Pulmonary Nodules from Benign Nodules. BIOIMAGING (2016)
Jian Ren, Evita T. Sadimin, Daihou Wang, Jonathan I. Epstein, David J. Foran, Xin Qi
Computer aided analysis of prostate histopathology images Gleason grading especially for Gleason score 7. EMBC (2015)
Daihou Wang, David J. Foran, Xin Qi, Manish Parashar
HetroCV: Auto-tuning Framework and Runtime for Image Processing and Computer Vision Applications on Heterogeneous Platform. ICPP Workshops (2015)
Hai Su, Yong Shen, Fuyong Xing, Xin Qi, Kim M. Hirshfield, Lin Yang, David J. Foran
Robust automatic breast cancer staging using a combination of functional genomics and image-omics. EMBC (2015)
Tahsin M. Kurç, Xin Qi, Daihou Wang, Fusheng Wang, George Teodoro, Lee A. D. Cooper, Michael Nalisnik, Lin Yang, Joel H. Saltz, David J. Foran
Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies. BMC Bioinform. 16 (2015)
Daihou Wang, David J. Foran, Jian Ren, Hua Zhong, Isaac Y. Kim, Xin Qi
Exploring automatic prostate histopathology image gleason grading via local structure modeling. EMBC (2015)
Mengsong Zou, Javier Diaz Montes, Ivan Rodero, Manish Parashar, Ioan Petri, Omer F. Rana, Xin Qi, David J. Foran
Collaborative marketplaces for eScience: A medical imaging use case. CTS (2014)
Rajarshi Roy, Wenjin Chen, Lei Cong, Lauri A. Goodell, David J. Foran, Jaydev P. Desai
Probabilistic Estimation of Mechanical Properties of Biomaterials Using Atomic Force Microscopy. IEEE Trans. Biomed. Eng. 61 (2) (2014)
Xin Qi, Daihou Wang, Ivan Rodero, Javier Diaz Montes, Rebekah H. Gensure, Fuyong Xing, Hua Zhong, Lauri A. Goodell, Manish Parashar, David J. Foran, Lin Yang
Content-based histopathology image retrieval using CometCloud. BMC Bioinform. 15 (2014)
Lin Yang, Xin Qi, Fuyong Xing, Tahsin M. Kurç, Joel H. Saltz, David J. Foran
Parallel content-based sub-image retrieval using hierarchical searching. Bioinform. 30 (7) (2014)
Xin Qi, Rebekah H. Gensure, David J. Foran, Lin Yang
Content-based white blood cell retrieval on bright-field pathology images. Medical Imaging: Digital Pathology (2013)
Rajarshi Roy, Wenjin Chen, Lei Cong, Lauri A. Goodell, David J. Foran, Jaydev P. Desai
A Semi-Automated Positioning System for Contact-Mode Atomic Force Microscopy (AFM). IEEE Trans Autom. Sci. Eng. 10 (2) (2013)
Fuyong Xing, Baiyang Liu, Xin Qi, David J. Foran, Lin Yang
Digitized tissue microarray classification using sparse reconstruction. Medical Imaging: Image Processing (2012)
Xin Qi, Fuyong Xing, David J. Foran, Lin Yang
Robust Segmentation of Overlapping Cells in Histopathology Specimens Using Parallel Seed Detection and Repulsive Level Set. IEEE Trans. Biomed. Eng. 59 (3) (2012)
William J. Cukierski, Kaustav Nandy, Prabhakar R. Gudla, Karen J. Meaburn, Tom Misteli, David J. Foran, Stephen J. Lockett
Ranked retrieval of segmented nuclei for objective assessment of cancer gene repositioning. BMC Bioinform. 13 (2012)
Xin Qi, Fuyong Xing, David J. Foran, Lin Yang
Comparative performance analysis of stained histopathology specimens using RGB and multispectral imaging. Medical Imaging: Computer-Aided Diagnosis (2011)
Baiyang Liu, Lin Yang, Casimir A. Kulikowski, Leiguang Gong, David J. Foran, Salma K. Jabbour, Ning J. Yue
Dynamic online registration guided collaborative tracking of lung tumor movement in fluoroscopic videos. ISBI (2011)
David J. Foran, Lin Yang, Wenjin Chen, Jun Hu, Lauri A. Goodell, Michael Reiss, Fusheng Wang, Tahsin M. Kurç, Tony Pan, Ashish Sharma, Joel H. Saltz
ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology. J. Am. Medical Informatics Assoc. 18 (4) (2011)
Patrick M. Widener, Tahsin M. Kurç, Wenjin Chen, Fusheng Wang, Lin Yang, Jun Hu, Vijay Kumar, Vicky Chu, Lee A. D. Cooper, Jun Kong, Ashish Sharma, Tony Pan, Joel H. Saltz, David J. Foran
High Performance Computing Techniques for Scaling Image Analysis Workflows. PARA (2) (2010)
Baiyang Liu, Lin Yang, Casimir A. Kulikowski, Jinghao Zhou, Leiguang Gong, David J. Foran, Salma J. Jabbour, Ning J. Yue
An adaptive tracking algorithm of lung tumors in fluoroscopy using online learned collaborative trackers. ISBI (2010)
William J. Cukierski, David J. Foran
Metamerism in multispectral imaging of histopathology specimens. ISBI (2010)
Lin Yang, Wenjin Chen, Peter Meer, Gratian Salaru, Lauri A. Goodell, Viktors Berstis, David J. Foran
Virtual Microscopy and Grid-Enabled Decision Support for Large-Scale Analysis of Imaged Pathology Specimens. IEEE Trans. Inf. Technol. Biomed. 13 (4) (2009)
Hyunjoo Kim, Manish Parashar, David J. Foran, Lin Yang
Investigating the use of autonomic cloudbursts for high-throughput medical image registration. GRID (2009)
Hong Zhang, Lin Yang, David J. Foran, John L. Nosher, Peter J. Yim
3D Segmentation of the Liver Using Free-Form Deformation Based on Boosting and Deformation Gradients. ISBI (2009)
Lin Yang, Oncel Tuzel, Wenjin Chen, Peter Meer, Gratian Salaru, Lauri A. Goodell, David J. Foran
PathMiner: A Web-Based Tool for Computer-Assisted Diagnostics in Pathology. IEEE Trans. Inf. Technol. Biomed. 13 (3) (2009)
David J. Foran, Lin Yang, Oncel Tuzel, Wenjin Chen, Jun Hu, Tahsin M. Kurç, Renato Ferreira, Joel H. Saltz
A caGrid-Enabled, Learning Based Image Segmentation Method for Histopathology Specimens. ISBI (2009)
William J. Cukierski, Xin Qi, David J. Foran
Moving Beyond Color: the Case for Multispectral Imaging in Brightfield Pathology. ISBI (2009)
Lin Yang, Leiguang Gong, Hong Zhang, John L. Nosher, David J. Foran
A Parallel Point Matching Algorithm for Landmark Based Image Registration Using Multicore Platform. Euro-Par (2009)
Gabriela Niculescu, John L. Nosher, M. D. Benjamin Schneider, David J. Foran
A deformable model for tracking tumors across consecutive imaging studies. Int. J. Comput. Assist. Radiol. Surg. 4 (4) (2009)
William J. Cukierski, David J. Foran
Using Betweenness Centrality to Identify Manifold Shortcuts. ICDM Workshops (2008)
Bonnie Hall, Monica Ianosi-Irimie, Parisa Javidian, Wenjin Chen, Shridar Ganesan, David J. Foran
Computer-assisted assessment of the Human Epidermal Growth Factor Receptor 2 immunohistochemical assay in imaged histologic sections using a membrane isolation algorithm and quantitative analysis of positive controls. BMC Medical Imaging 8 (2008)
Lin Yang, Bogdan Georgescu, Yefeng Zheng, David J. Foran, Dorin Comaniciu
A fast and accurate tracking algorithm of left ventricles in 3D echocardiography. ISBI (2008)
Lin Yang, Oncel Tuzel, Peter Meer, David J. Foran
Automatic Image Analysis of Histopathology Specimens Using Concave Vertex Graph. MICCAI (1) (2008)
Lin Yang, Wenjin Chen, Peter Meer, Gratian Salaru, Michael D. Feldman, David J. Foran
High Throughput Analysis of Breast Cancer Specimens on the Grid. MICCAI (1) (2007)
Lin Yang, David J. Foran
A Variational Framework for Partially Occluded Image Segmentation using Coarse to Fine Shape Alignment and Semi-Parametric Density Approximation. ICIP (1) (2007)
Oncel Tuzel, Lin Yang, Peter Meer, David J. Foran
Classification of hematologic malignancies using texton signatures. Pattern Anal. Appl. 10 (4) (2007)
Bonnie Hall, Wenjin Chen, Michael Reiss, David J. Foran
A Clinically Motivated 2-Fold Framework for Quantifying and Classifying Immunohistochemically Stained Specimens. MICCAI (2) (2007)
Lin Yang, Peter Meer, David J. Foran
Multiple Class Segmentation Using A Unified Framework over Mean-Shift Patches. CVPR (2007)
Wenjin Chen, Peter Meer, Bogdan Georgescu, Wei He, Lauri A. Goodell, David J. Foran
Image mining for investigative pathology using optimized feature extraction and data fusion. Comput. Methods Programs Biomed. 79 (1) (2005)
Lin Yang, Peter Meer, David J. Foran
Unsupervised segmentation based on robust estimation and color active contour models. IEEE Trans. Inf. Technol. Biomed. 9 (3) (2005)
Wenjin Chen, Michael Reiss, David J. Foran
A Prototype for Unsupervised Analysis of Tissue Microarrays for Cancer Research and Diagnostics. IEEE Trans. Inf. Technol. Biomed. 8 (2) (2004)
Cristina Schmidt, Manish Parashar, Wenjin Chen, David J. Foran
Engineering a Peer-to-Peer Collaboratory for Tissue Microarray Research. CLADE (2004)
Peter J. Yim, David J. Foran
Volumetry of Hepatic Metastases in Computed Tomography Using the Watershed and Active Contour Algorithms. CBMS (2003)
Gabriela Niculescu, Louay Toni, David J. Foran, John L. Nosher, Kevin J. DeMarco
A Dynamic Imaging Database for 3-D Morphologic Analysis and Clinical Assessment in Diagnostic Radiology. AMIA (2002)
Wenjin Chen, David J. Foran, Michael Reiss
Unsupervised imaging, registration and archiving of tissue microarrays. AMIA (2002)
David J. Foran, Dorin Comaniciu, Peter Meer, Lauri A. Goodell
Computer-assisted discrimination among malignant lymphomas and leukemia using immunophenotyping, intelligent image repositories, and telemicroscopy. IEEE Trans. Inf. Technol. Biomed. 4 (4) (2000)
Dorin Comaniciu, Peter Meer, David J. Foran
Image-guided decision support system for pathology. Mach. Vis. Appl. 11 (4) (1999)
Dorin Comaniciu, Bogdan Georgescu, Peter Meer, Wenjin Chen, David J. Foran
Decision Support System for Multiuser Remote Microscopy in Telepathology. CBMS (1999)
Dorin Comaniciu, Peter Meer, David J. Foran
Shape-based image indexing and retrieval for diagnostic pathology. ICPR (1998)
Dorin Comaniciu, Peter Meer, David J. Foran, Attila Medl
Bimodal system for interactive indexing and retrieval of pathology images. WACV (1998)
Dorin Comaniciu, Peter Meer, David J. Foran, Attila Medl
Bimodal system for interactive indexing and retrieval of pathology images. WACV (1998)
David J. Foran, Peter Meer, Thomas V. Papathomas, Ivan Marsic
Compression guidelines for diagnostic telepathology. IEEE Trans. Inf. Technol. Biomed. 1 (1) (1997)
David J. Foran, Peter Meer, Thomas V. Papathomas, Ivan Marsic, Leiguang Gong, Casimir A. Kulikowski, R. L. Trelstad
Establishing perceptual criteria on image quality in diagnostic telepathology. ICIP (1) (1996)