Lin Yang

Publication Activity (10 Years)

Years Active: 2011-2023
Publications (10 Years): 77

Top Topics

Histopathological Images

Weakly Supervised

Image Segmentation

Image Retrieval

Top Venues

Medical Image Anal.

Publications

Dongqing Hu, Hansheng Li, Yuxin Kang, Jiayu Luo, Qingguo Yan, Ying Guo, Lei Cui, Jun Feng, Lin Yang
Automated Region Learning Via Cell-Level Labels to Modify Cell Detection Process For Histopathological Images. ISBI (2023)
Hansheng Li, Zhengyang Xu, Mo Zhou, Xiaoshuang Shi, Yuxin Kang, Qirong Bu, Hong Lv, Ming Li, Mingzhen Lin, Lei Cui, Jun Feng, Wentao Yang, Lin Yang
Segment Membranes and Nuclei from Histopathological Images via Nuclei Point-Level Supervision. MICCAI (6) (2023)
Yuxin Kang, Hansheng Li, Xuan Zhao, Dongqing Hu, Feihong Liu, Lei Cui, Jun Feng, Lin Yang
Invariant Content Synergistic Learning for Domain Generalization of Medical Image Segmentation. CoRR (2022)
Yuxin Kang, Hansheng Li, Xuan Zhao, Xiaoshuang Shi, Feihong Liu, Qingguo Yan, Ying Guo, Lei Cui, Jun Feng, Lin Yang
Invariant Content Synergistic Learning for Domain Generalization on Medical Image Segmentation. BIBM (2022)
Hansheng Li, JianPing Li, Yuxin Kang, Chunbao Wang, Feihong Liu, Wenli Hui, Qirong Bo, Lei Cui, Jun Feng, Lin Yang
A Novel Encoding and Decoding Calibration Guiding Pathway for Pathological Image Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (1) (2022)
Xuan Zhao, Yuxin Kang, Hansheng Li, Jiayu Luo, Lei Cui, Jun Feng, Lin Yang
A Random Feature Augmentation for Domain Generalization in Medical Image Segmentation. BIBM (2022)
Pingjun Chen, Yun Liang, Xiaoshuang Shi, Lin Yang, Paul D. Gader
Automatic whole slide pathology image diagnosis framework via unit stochastic selection and attention fusion. Neurocomputing 453 (2021)
Jinzheng Cai, Adam P. Harrison, Youjing Zheng, Ke Yan, Yuankai Huo, Jing Xiao, Lin Yang, Le Lu
Lesion-Harvester: Iteratively Mining Unlabeled Lesions and Hard-Negative Examples at Scale. IEEE Trans. Medical Imaging 40 (1) (2021)
Zizhao Zhang, Pingjun Chen, Xiaoshuang Shi, Lin Yang
Text-Guided Neural Network Training for Image Recognition in Natural Scenes and Medicine. IEEE Trans. Pattern Anal. Mach. Intell. 43 (5) (2021)
Xiaoshuang Shi, Fuyong Xing, Zizhao Zhang, Manish Sapkota, Zhenhua Guo, Lin Yang
A Scalable Optimization Mechanism for Pairwise Based Discrete Hashing. IEEE Trans. Image Process. 30 (2021)
Hansheng Li, Yuxin Kang, Lingyu Hu, Qian Ma, Lei Cui, Jun Feng, Lin Yang, Wentao Yang
Robust Pathological Detector Training Method on Sparsely Annotated Datasets via Spatial Cues. BIBM (2021)
Xiaoshuang Shi, Fuyong Xing, Yuanpu Xie, Zizhao Zhang, Lei Cui, Lin Yang
Loss-Based Attention for Deep Multiple Instance Learning. AAAI (2020)
Jinzheng Cai, Adam P. Harrison, Youjing Zheng, Ke Yan, Yuankai Huo, Jing Xiao, Lin Yang, Le Lu
Lesion Harvester: Iteratively Mining Unlabeled Lesions and Hard-Negative Examples at Scale. CoRR (2020)
Xiaoshuang Shi, Hai Su, Fuyong Xing, Yun Liang, Gang Qu, Lin Yang
Graph temporal ensembling based semi-supervised convolutional neural network with noisy labels for histopathology image analysis. Medical Image Anal. 60 (2020)
Xiaoshuang Shi, Zhenhua Guo, Fuyong Xing, Yun Liang, Lin Yang
Anchor-Based Self-Ensembling for Semi-Supervised Deep Pairwise Hashing. Int. J. Comput. Vis. 128 (8) (2020)
Pingjun Chen, Xiaoshuang Shi, Yun Liang, Yuan Li, Lin Yang, Paul D. Gader
Interactive thyroid whole slide image diagnostic system using deep representation. Comput. Methods Programs Biomed. 195 (2020)
Hansheng Li, Xin Han, Yuxin Kang, Xiaoshuang Shi, Mengdi Yan, Zixu Tong, Qirong Bu, Lei Cui, Jun Feng, Lin Yang
A Novel Loss Calibration Strategy for Object Detection Networks Training on Sparsely Annotated Pathological Datasets. MICCAI (5) (2020)
Pingjun Chen, Jinzheng Cai, Lin Yang
Chromosome Segmentation via Data Simulation and Shape Learning. EMBC (2020)
Yuan Li, Pingjun Chen, Zhiyuan Li, Hai Su, Lin Yang, Dingrong Zhong
Rule-based automatic diagnosis of thyroid nodules from intraoperative frozen sections using deep learning. Artif. Intell. Medicine 108 (2020)
Pingjun Chen, Lin Yang
tissueloc: Whole slide digital pathology image tissue localization. J. Open Source Softw. 4 (33) (2019)
Xiaoshuang Shi, Fuyong Xing, Zhenhua Guo, Hai Su, Fujun Liu, Lin Yang
Structured orthogonal matching pursuit for feature selection. Neurocomputing 349 (2019)
Manish Sapkota, Xiaoshuang Shi, Fuyong Xing, Lin Yang
Deep Convolutional Hashing for Low-Dimensional Binary Embedding of Histopathological Images. IEEE J. Biomed. Health Informatics 23 (2) (2019)
Fuyong Xing, Toby C. Cornish, Tell Bennett, Debashis Ghosh, Lin Yang
Pixel-to-Pixel Learning With Weak Supervision for Single-Stage Nucleus Recognition in Ki67 Images. IEEE Trans. Biomed. Eng. 66 (11) (2019)
Zizhao Zhang, Pingjun Chen, Mason McGough, Fuyong Xing, Chunbao Wang, Marilyn Bui, Yuanpu Xie, Manish Sapkota, Lei Cui, Jasreman Dhillon, Nazeel Ahmad, Farah K. Khalil, Shohreh I. Dickinson, Xiaoshuang Shi, Fujun Liu, Hai Su, Jinzheng Cai, Lin Yang
Publisher Correction: Pathologist-level interpretable whole-slide cancer diagnosis with deep learning. Nat. Mach. Intell. 1 (6) (2019)
Fuyong Xing, Yuanpu Xie, Xiaoshuang Shi, Pingjun Chen, Zizhao Zhang, Lin Yang
Correction to: Towards pixel-to-pixel deep nucleus detection in microscopy images. BMC Bioinform. 20 (1) (2019)
Hai Su, Xiaoshuang Shi, Jinzheng Cai, Lin Yang
Local and Global Consistency Regularized Mean Teacher for Semi-supervised Nuclei Classification. MICCAI (1) (2019)
Zizhao Zhang, Pingjun Chen, Mason McGough, Fuyong Xing, Chunbao Wang, Marilyn Bui, Yuanpu Xie, Manish Sapkota, Lei Cui, Jasreman Dhillon, Nazeel Ahmad, Farah K. Khalil, Shohreh I. Dickinson, Xiaoshuang Shi, Fujun Liu, Hai Su, Jinzheng Cai, Lin Yang
Publisher Correction: Pathologist-level interpretable whole-slide cancer diagnosis with deep learning. Nat. Mach. Intell. 1 (8) (2019)
Jinzheng Cai, Fuyong Xing, Abhinandan Batra, Fujun Liu, Glenn A. Walter, Krista Vandenborne, Lin Yang
Texture analysis for muscular dystrophy classification in MRI with improved class activation mapping. Pattern Recognit. 86 (2019)
Pingjun Chen, Linlin Gao, Xiaoshuang Shi, Kyle Allen, Lin Yang
Fully automatic knee osteoarthritis severity grading using deep neural networks with a novel ordinal loss. Comput. Medical Imaging Graph. 75 (2019)
Fuyong Xing, Yuanpu Xie, Xiaoshuang Shi, Pingjun Chen, Zizhao Zhang, Lin Yang
Towards pixel-to-pixel deep nucleus detection in microscopy images. BMC Bioinform. 20 (1) (2019)
Zizhao Zhang, Pingjun Chen, Mason McGough, Fuyong Xing, Chunbao Wang, Marilyn Bui, Yuanpu Xie, Manish Sapkota, Lei Cui, Jaspreet Singh Dhillon, Nazeel Ahmad, Farah K. Khalil, Shohreh I. Dickinson, Xiaoshuang Shi, Fujun Liu, Hai Su, Jinzheng Cai, Lin Yang
Pathologist-level interpretable whole-slide cancer diagnosis with deep learning. Nat. Mach. Intell. 1 (5) (2019)
Jinzheng Cai, Zizhao Zhang, Lei Cui, Yefeng Zheng, Lin Yang
Towards cross-modal organ translation and segmentation: A cycle- and shape-consistent generative adversarial network. Medical Image Anal. 52 (2019)
Jinzheng Cai, Le Lu, Fuyong Xing, Lin Yang
Pancreas Segmentation in CT and MRI Images via Domain Specific Network Designing and Recurrent Neural Contextual Learning. CoRR (2018)
Manish Sapkota, Fujun Liu, Yuanpu Xie, Hai Su, Fuyong Xing, Lin Yang
AIIMDs: An Integrated Framework of Automatic Idiopathic Inflammatory Myopathy Diagnosis for Muscle. IEEE J. Biomed. Health Informatics 22 (3) (2018)
Xiaoshuang Shi, Manish Sapkota, Fuyong Xing, Fujun Liu, Lei Cui, Lin Yang
Pairwise based deep ranking hashing for histopathology image classification and retrieval. Pattern Recognit. 81 (2018)
Jinzheng Cai, Youbao Tang, Le Lu, Adam P. Harrison, Ke Yan, Jing Xiao, Lin Yang, Ronald M. Summers
Accurate Weakly Supervised Deep Lesion Segmentation on CT Scans: Self-Paced 3D Mask Generation from RECIST. CoRR (2018)
Jinzheng Cai, Youbao Tang, Le Lu, Adam P. Harrison, Ke Yan, Jing Xiao, Lin Yang, Ronald M. Summers
Accurate Weakly-Supervised Deep Lesion Segmentation using Large-Scale Clinical Annotations: Slice-Propagated 3D Mask Generation from 2D RECIST. CoRR (2018)
Yuanpu Xie, Fuyong Xing, Xiaoshuang Shi, Xiangfei Kong, Hai Su, Lin Yang
Efficient and robust cell detection: A structured regression approach. Medical Image Anal. 44 (2018)
Jinzheng Cai, Le Lu, Adam P. Harrison, Xiaoshuang Shi, Pingjun Chen, Lin Yang
Iterative Attention Mining for Weakly Supervised Thoracic Disease Pattern Localization in Chest X-Rays. MICCAI (2) (2018)
Youbao Tang, Jinzheng Cai, Le Lu, Adam P. Harrison, Ke Yan, Jing Xiao, Lin Yang, Ronald M. Summers
CT Image Enhancement Using Stacked Generative Adversarial Networks and Transfer Learning for Lesion Segmentation Improvement. MLMI@MICCAI (2018)
Youbao Tang, Jinzheng Cai, Le Lu, Adam P. Harrison, Ke Yan, Jing Xiao, Lin Yang, Ronald M. Summers
CT Image Enhancement Using Stacked Generative Adversarial Networks and Transfer Learning for Lesion Segmentation Improvement. CoRR (2018)
Jinzheng Cai, Le Lu, Adam P. Harrison, Xiaoshuang Shi, Pingjun Chen, Lin Yang
Iterative Attention Mining for Weakly Supervised Thoracic Disease Pattern Localization in Chest X-Rays. CoRR (2018)
Fuyong Xing, Yuanpu Xie, Hai Su, Fujun Liu, Lin Yang
Deep Learning in Microscopy Image Analysis: A Survey. IEEE Trans. Neural Networks Learn. Syst. 29 (10) (2018)
Xiaoshuang Shi, Zhenhua Guo, Fuyong Xing, Jinzheng Cai, Lin Yang
Self-learning for face clustering. Pattern Recognit. 79 (2018)
Xiaoshuang Shi, Fuyong Xing, Zizhao Zhang, Manish Sapkota, Zhenhua Guo, Lin Yang
A Scalable Optimization Mechanism for Pairwise based Discrete Hashing. CoRR (2018)
Jinzheng Cai, Youbao Tang, Le Lu, Adam P. Harrison, Ke Yan, Jing Xiao, Lin Yang, Ronald M. Summers
Accurate Weakly-Supervised Deep Lesion Segmentation Using Large-Scale Clinical Annotations: Slice-Propagated 3D Mask Generation from 2D RECIST. MICCAI (4) (2018)
Zizhao Zhang, Fuyong Xing, Hanzi Wang, Yan Yan, Ying Huang, Xiaoshuang Shi, Lin Yang
Revisiting graph construction for fast image segmentation. Pattern Recognit. 78 (2018)
Zizhao Zhang, Fuyong Xing, Hai Su, Xiaoshuang Shi, Lin Yang
Recent Advances in the Applications of Convolutional Neural Networks to Medical Image Contour Detection. CoRR (2017)
Jinzheng Cai, Le Lu, Yuanpu Xie, Fuyong Xing, Lin Yang
Pancreas Segmentation in MRI Using Graph-Based Decision Fusion on Convolutional Neural Networks. MICCAI (3) (2017)
Zizhao Zhang, Yuanpu Xie, Fuyong Xing, Mason McGough, Lin Yang
MDNet: A Semantically and Visually Interpretable Medical Image Diagnosis Network. CoRR (2017)
Xiaoshuang Shi, Fuyong Xing, Kaidi Xu, Yuanpu Xie, Hai Su, Lin Yang
Supervised graph hashing for histopathology image retrieval and classification. Medical Image Anal. 42 (2017)
Zizhao Zhang, Yuanpu Xie, Fuyong Xing, Mason McGough, Lin Yang
MDNet: A Semantically and Visually Interpretable Medical Image Diagnosis Network. CVPR (2017)
Zizhao Zhang, Pingjun Chen, Manish Sapkota, Lin Yang
TandemNet: Distilling Knowledge from Medical Images Using Diagnostic Reports as Optional Semantic References. CoRR (2017)
Xiaoshuang Shi, Fuyong Xing, Kaidi Xu, Manish Sapkota, Lin Yang
Asymmetric Discrete Graph Hashing. AAAI (2017)
Zizhao Zhang, Fuyong Xing, Xiaoshuang Shi, Lin Yang
Revisiting Graph Construction for Fast Image Segmentation. CoRR (2017)
Xiaoshuang Shi, Fuyong Xing, Yuanpu Xie, Hai Su, Lin Yang
Cell Encoding for Histopathology Image Classification. MICCAI (2) (2017)
Jinzheng Cai, Le Lu, Yuanpu Xie, Fuyong Xing, Lin Yang
Improving Deep Pancreas Segmentation in CT and MRI Images via Recurrent Neural Contextual Learning and Direct Loss Function. CoRR (2017)
Zizhao Zhang, Pingjun Chen, Manish Sapkota, Lin Yang
TandemNet: Distilling Knowledge from Medical Images Using Diagnostic Reports as Optional Semantic References. MICCAI (3) (2017)
Xiaoshuang Shi, Fuyong Xing, Jinzheng Cai, Zizhao Zhang, Yuanpu Xie, Lin Yang
Kernel-Based Supervised Discrete Hashing for Image Retrieval. ECCV (7) (2016)
Jinzheng Cai, Le Lu, Zizhao Zhang, Fuyong Xing, Lin Yang, Qian Yin
Pancreas Segmentation in MRI Using Graph-Based Decision Fusion on Convolutional Neural Networks. MICCAI (2) (2016)
Hai Su, Fuyong Xing, Lin Yang
Robust Cell Detection of Histopathological Brain Tumor Images Using Sparse Reconstruction and Adaptive Dictionary Selection. IEEE Trans. Medical Imaging 35 (6) (2016)
Fuyong Xing, Yuanpu Xie, Lin Yang
An Automatic Learning-Based Framework for Robust Nucleus Segmentation. IEEE Trans. Medical Imaging 35 (2) (2016)
Zizhao Zhang, Fuyong Xing, Xiaoshuang Shi, Lin Yang
SemiContour: A Semi-supervised Learning Approach for Contour Detection. CoRR (2016)
Fuyong Xing, Xiaoshuang Shi, Zizhao Zhang, Jinzheng Cai, Yuanpu Xie, Lin Yang
Transfer Shape Modeling Towards High-Throughput Microscopy Image Segmentation. MICCAI (3) (2016)
Xiaoshuang Shi, Zhenhua Guo, Feiping Nie, Lin Yang, Jane You, Dacheng Tao
Two-Dimensional Whitening Reconstruction for Enhancing Robustness of Principal Component Analysis. IEEE Trans. Pattern Anal. Mach. Intell. 38 (10) (2016)
Zizhao Zhang, Fuyong Xing, Xiaoshuang Shi, Lin Yang
SemiContour: A Semi-Supervised Learning Approach for Contour Detection. CVPR (2016)
Yuanpu Xie, Fuyong Xing, Xiangfei Kong, Hai Su, Lin Yang
Beyond Classification: Structured Regression for Robust Cell Detection Using Convolutional Neural Network. MICCAI (3) (2015)
Fujun Liu, Fuyong Xing, Zizhao Zhang, Mason McGough, Lin Yang
Robust Muscle Cell Quantification Using Structured Edge Detection and Hierarchical Segmentation. MICCAI (3) (2015)
Xiaofan Zhang, Fuyong Xing, Hai Su, Lin Yang, Shaoting Zhang
High-throughput histopathological image analysis via robust cell segmentation and hashing. Medical Image Anal. 26 (1) (2015)
Hai Su, Fujun Liu, Yuanpu Xie, Fuyong Xing, Sreenivasan Meyyappan, Lin Yang
Region segmentation in histopathological breast cancer images using deep convolutional neural network. ISBI (2015)
Xiaoshuang Shi, Zhenhua Guo, Yujiu Yang, Lin Yang
Within-class penalty based multi-class support vector machine. ICIP (2015)
Fuyong Xing, Lin Yang
Fast Cell Segmentation Using Scalable Sparse Manifold Learning and Affine Transform-Approximated Active Contour. MICCAI (3) (2015)
Manish Sapkota, Fuyong Xing, Hai Su, Lin Yang
Automatic muscle perimysium annotation using deep convolutional neural network. ISBI (2015)
Yuanpu Xie, Xiangfei Kong, Fuyong Xing, Fujun Liu, Hai Su, Lin Yang
Deep Voting: A Robust Approach Toward Nucleus Localization in Microscopy Images. MICCAI (3) (2015)
Hai Su, Yong Shen, Fuyong Xing, Xin Qi, Kim M. Hirshfield, Lin Yang, David J. Foran
Robust automatic breast cancer staging using a combination of functional genomics and image-omics. EMBC (2015)
Hai Su, Fuyong Xing, Xiangfei Kong, Yuanpu Xie, Shaoting Zhang, Lin Yang
Robust Cell Detection and Segmentation in Histopathological Images Using Sparse Reconstruction and Stacked Denoising Autoencoders. MICCAI (3) (2015)
Fuyong Xing, Lin Yang
Unsupervised shape prior modeling for cell segmentation in neuroendocrine tumor. ISBI (2015)
Hongyuan Wang, Fuyong Xing, Hai Su, Arnold J. Stromberg, Lin Yang
Novel image markers for non-small cell lung cancer classification and survival prediction. BMC Bioinform. 15 (2014)
Fujun Liu, Fuyong Xing, Hai Su, Lin Yang
Touching adipocyte cells decomposition using combinatorial optimization. ISBI (2014)
Fujun Liu, Fuyong Xing, Lin Yang
Robust muscle cell segmentation using region selection with dynamic programming. ISBI (2014)
Xin Qi, Daihou Wang, Ivan Rodero, Javier Diaz Montes, Rebekah H. Gensure, Fuyong Xing, Hua Zhong, Lauri A. Goodell, Manish Parashar, David J. Foran, Lin Yang
Content-based histopathology image retrieval using CometCloud. BMC Bioinform. 15 (2014)
Lin Yang, Xin Qi, Fuyong Xing, Tahsin M. Kurç, Joel H. Saltz, David J. Foran
Parallel content-based sub-image retrieval using hierarchical searching. Bioinform. 30 (7) (2014)
Fuyong Xing, Hai Su, Janna Neltner, Lin Yang
Automatic Ki-67 Counting Using Robust Cell Detection and Online Dictionary Learning. IEEE Trans. Biomed. Eng. 61 (3) (2014)
Hai Su, Fuyong Xing, Jonah D. Lee, Charlotte A. Peterson, Lin Yang
Automatic Myonuclear Detection in IsolatedSingle Muscle Fibers Using Robust EllipseFitting and Sparse Representation. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (4) (2014)
Fuyong Xing, Lin Yang
Robust cell segmentation for non-small cell lung cancer. ISBI (2013)
Fuyong Xing, Hai Su, Lin Yang
An Integrated Framework for Automatic Ki-67 Scoring in Pancreatic Neuroendocrine Tumor. MICCAI (1) (2013)
Fuyong Xing, Lin Yang
Robust Selection-Based Sparse Shape Model for Lung Cancer Image Segmentation. MICCAI (3) (2013)
Hai Su, Fuyong Xing, Jonah D. Lee, Charlotte A. Peterson, Lin Yang
Learning based automatic detection of myonuclei in isolated single skeletal muscle fibers using multi-focus image fusion. ISBI (2013)
Fuyong Xing, Baiyang Liu, Xin Qi, David J. Foran, Lin Yang
Digitized tissue microarray classification using sparse reconstruction. Medical Imaging: Image Processing (2012)
Xin Qi, Fuyong Xing, David J. Foran, Lin Yang
Robust Segmentation of Overlapping Cells in Histopathology Specimens Using Parallel Seed Detection and Repulsive Level Set. IEEE Trans. Biomed. Eng. 59 (3) (2012)
Xin Qi, Fuyong Xing, David J. Foran, Lin Yang
Comparative performance analysis of stained histopathology specimens using RGB and multispectral imaging. Medical Imaging: Computer-Aided Diagnosis (2011)