Rónán Daly

Publication Activity (10 Years)

Years Active: 2005-2022
Publications (10 Years): 8

Top Topics

Scoring Functions

Dynamical Systems

Mass Spectrometry

Top Venues

Publications

Joe Wandy, Vinny Davies, Ross McBride, Stefan Weidt, Simon Rogers, Rónán Daly
ViMMS 2.0: A framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics. J. Open Source Softw. 7 (71) (2022)
Grímur Hjörleifsson Eldjárn, Andrew Ramsay, Justin J. J. van der Hooft, Katherine R. Duncan, Sylvia Soldatou, Juho Rousu, Rónán Daly, Joe Wandy, Simon Rogers
Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions. PLoS Comput. Biol. 17 (5) (2021)
Mu Niu, Joe Wandy, Rónán Daly, Simon Rogers, Dirk Husmeier
R package for statistical inference in dynamical systems using kernel based gradient matching: KGode. Comput. Stat. 36 (1) (2021)
Joe Wandy, Rónán Daly
GraphOmics: an interactive platform to explore and integrate multi-omics data. BMC Bioinform. 22 (1) (2021)
Joe Wandy, Mu Niu, Diana Giurghita, Rónán Daly, Simon Rogers, Dirk Husmeier
ShinyKGode: an interactive application for ODE parameter inference using gradient matching. Bioinform. 34 (13) (2018)
Anargyros Megalios, Rónán Daly, Karl E. V. Burgess
MetaboCraft: building a Minecraft plugin for metabolomics. Bioinform. 34 (15) (2018)
Joe Wandy, Yunfeng Zhu, Justin J. J. van der Hooft, Rónán Daly, Michael P. Barrett, Simon Rogers
Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry. Bioinform. 34 (2) (2018)
Yoann Gloaguen, Fraser R. Morton, Rónán Daly, Ross Gurden, Simon Rogers, Joe Wandy, David Wilson, Michael P. Barrett, Karl E. V. Burgess
PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data. Bioinform. 33 (24) (2017)
Joe Wandy, Rónán Daly, Rainer Breitling, Simon Rogers
Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets. Bioinform. 31 (12) (2015)
Rónán Daly, Qiang Shen
Learning Bayesian Network Equivalence Classes with Ant Colony Optimization. CoRR (2014)
Rónán Daly, Simon Rogers, Joe Wandy, Andris Jankevics, Karl E. V. Burgess, Rainer Breitling
MetAssign: probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach. Bioinform. 30 (19) (2014)
Rónán Daly, Shishir Kumar, Gyongyi Lukacs, Kangho Lee, Anne Weidlich, Martin Hegner, Georg S. Duesberg
Cell Proliferation Tracking Using Graphene Sensor Arrays. J. Sensors 2012 (2012)
Rónán Daly, Qiang Shen, J. Stuart Aitken
Learning Bayesian networks: approaches and issues. Knowl. Eng. Rev. 26 (2) (2011)
Rónán Daly, Qiang Shen
Learning Bayesian Network Equivalence Classes with Ant Colony Optimization. J. Artif. Intell. Res. 35 (2009)
Rónán Daly, Kieron D. Edwards, John S. O'Neill, J. Stuart Aitken, Andrew J. Millar, Mark A. Girolami
Using Higher-Order Dynamic Bayesian Networks to Model Periodic Data from the Circadian Clock of Arabidopsis Thaliana. PRIB (2009)
Rónán Daly, Qiang Shen, J. Stuart Aitken
Speeding up the learning of equivalence classes of bayesian network structures. Artificial Intelligence and Soft Computing (2006)
J. Stuart Aitken, Thanyaluk Jirapech-Umpai, Rónán Daly
Inferring gene regulatory networks from classified microarray data: Initial results. BMC Bioinform. 6 (S-3) (2005)