Albert J. Kooistra

Publication Activity (10 Years)

Years Active: 2010-2023
Publications (10 Years): 11

Top Topics

Structural Similarities

Protein Homology

Top Venues

J. Chem. Inf. Model.

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Georgi K. Kanev, Yaran Zhang, Albert J. Kooistra, Andreas Bender, Rob Leurs, David Bailey, Thomas Würdinger, Chris de Graaf, Iwan J. P. de Esch, Bart A. Westerman
Predicting the target landscape of kinase inhibitors using 3D convolutional neural networks. PLoS Comput. Biol. 19 (9) (2023)
Gáspár Pándy-Szekeres, Jimmy Caroli, Alibek Mamyrbekov, Ali A Kermani, György M. Keserü, Albert J. Kooistra, David E. Gloriam
GPCRdb in 2023: state-specific structure models using AlphaFold2 and new ligand resources. Nucleic Acids Res. 51 (D1) (2023)
Gáspár Pándy-Szekeres, Mauricio Esguerra, Alexander S. Hauser, Jimmy Caroli, Christian Munk, Steven Pilger, György M. Keserü, Albert J. Kooistra, David E. Gloriam
The G protein database, GproteinDb. Nucleic Acids Res. 50 (D1) (2022)
Dominique Sydow, Eva Aßmann, Albert J. Kooistra, Friedrich Rippmann, Andrea Volkamer
KiSSim: Predicting Off-Targets from Structural Similarities in the Kinome. J. Chem. Inf. Model. 62 (10) (2022)
Georgi K. Kanev, Chris de Graaf, Bart A. Westerman, Iwan J. P. de Esch, Albert J. Kooistra
KLIFS: an overhaul after the first 5 years of supporting kinase research. Nucleic Acids Res. 49 (Database-Issue) (2021)
Albert J. Kooistra, Stefan Mordalski, Gáspár Pándy-Szekeres, Mauricio Esguerra, Alibek Mamyrbekov, Christian Munk, György M. Keserü, David E. Gloriam
GPCRdb in 2021: integrating GPCR sequence, structure and function. Nucleic Acids Res. 49 (Database-Issue) (2021)
Ross McGuire, Stefan Verhoeven, Márton Vass, Gerrit Vriend, Iwan J. P. de Esch, Scott J. Lusher, Rob Leurs, Lars Ridder, Albert J. Kooistra, Tina Ritschel, Chris de Graaf
3D-e-Chem-VM: Structural Cheminformatics Research Infrastructure in a Freely Available Virtual Machine. J. Chem. Inf. Model. 57 (2) (2017)
Albert J. Kooistra, Georgi K. Kanev, Oscar P. J. van Linden, Rob Leurs, Iwan J. P. de Esch, Chris de Graaf
KLIFS: a structural kinase-ligand interaction database. Nucleic Acids Res. 44 (Database-Issue) (2016)
Sabine Schultes, Albert J. Kooistra, Henry F. Vischer, Saskia Nijmeijer, Eric E. J. Haaksma, Rob Leurs, Iwan J. P. de Esch, Chris de Graaf
Receptors. J. Chem. Inf. Model. 55 (5) (2015)
Oscar Méndez-Lucio, Albert J. Kooistra, Chris de Graaf, Andreas Bender, José L. Medina-Franco
Analyzing Multitarget Activity Landscapes Using Protein-Ligand Interaction Fingerprints: Interaction Cliffs. J. Chem. Inf. Model. 55 (2) (2015)
Albert J. Kooistra, Rob Leurs, Iwan J. P. de Esch, Chris de Graaf
Structure-Based Prediction of G-Protein-Coupled Receptor Ligand Function: A β-Adrenoceptor Case Study. J. Chem. Inf. Model. 55 (5) (2015)
Francesco Sirci, Enade P. Istyastono, Henry F. Vischer, Albert J. Kooistra, Saskia Nijmeijer, Martien Kuijer, Maikel Wijtmans, Raimund Mannhold, Rob Leurs, Iwan J. P. de Esch, Chris de Graaf
Receptor Ligands Using Ligand-Based and Protein-Based Molecular Fingerprints. J. Chem. Inf. Model. 52 (12) (2012)
Albert J. Kooistra, Thomas W. Binsl, Johannes H. G. M. van Beek, Chris de Graaf, Jaap Heringa
Electron Density Fingerprints (EDprints): Virtual Screening Using Assembled Information of Electron Density. J. Chem. Inf. Model. 50 (10) (2010)