José L. Medina-Franco

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 30

Top Topics

Visual Representations

Quantitative Analysis

Top Venues

J. Chem. Inf. Model.

J. Cheminformatics

J. Comput. Aided Mol. Des.

Publications

Angel Jonathan Ruiz-Moreno, Raziel Cedillo-González, Luis Cordova-Bahena, Zhiqiang An, José L. Medina-Franco, Marco Velasco-Velázquez
Inhibitors from Large Chemical Libraries. J. Chem. Inf. Model. 64 (6) (2024)
Juan F. Avellaneda-Tamayo, Ana L. Chávez-Hernández, Diana L. Prado-Romero, José L. Medina-Franco
Chemical Multiverse and Diversity of Food Chemicals. J. Chem. Inf. Model. 64 (4) (2024)
Karla Gonzalez-Ponce, Carolina Horta Andrade, Fiona Hunter, Johannes Kirchmair, Karina Martínez-Mayorga, José L. Medina-Franco, Matthias Rarey, Alexander Tropsha, Alexandre Varnek, Barbara Zdrazil
School of cheminformatics in Latin America. J. Cheminformatics 15 (1) (2023)
Daniela Gaytán-Hernández, Ana L. Chávez-Hernández, Edgar López-López, Jazmín Miranda-Salas, Fernanda I. Saldívar-González, José L. Medina-Franco
Art driven by visual representations of chemical space. J. Cheminformatics 15 (1) (2023)
José L. Medina-Franco, Edgar López-López
The Essence and Transcendence of Scientific Publishing. Frontiers Res. Metrics Anal. 7 (2022)
José L. Medina-Franco, Norberto Sánchez-Cruz, Edgar López-López, Bárbara I. Díaz-Eufracio
Progress on open chemoinformatic tools for expanding and exploring the chemical space. J. Comput. Aided Mol. Des. 36 (5) (2022)
Jürgen Bajorath, Ana L. Chávez-Hernández, Miquel Duran-Frigola, Eli Fernández-de Gortari, Johann Gasteiger, Edgar López-López, Gerald M. Maggiora, José L. Medina-Franco, Oscar Méndez-Lucio, Jordi Mestres, Ramón Alain Miranda-Quintana, Tudor I. Oprea, Fabien Plisson, Fernando D. Prieto-Martínez, Raquel Rodríguez-Pérez, Paola Rondón-Villarreal, Fernanda I. Saldívar-González, Norberto Sánchez-Cruz, Marilia Valli
Chemoinformatics and artificial intelligence colloquium: progress and challenges in developing bioactive compounds. J. Cheminformatics 14 (1) (2022)
Timothy B. Dunn, Gustavo de M. Seabra, Taewon David Kim, K. Eurídice Juárez-Mercado, Chenglong Li, José L. Medina-Franco, Ramón Alain Miranda-Quintana
Diversity and Chemical Library Networks of Large Data Sets. J. Chem. Inf. Model. 62 (9) (2022)
Veerabahu Shanmugasundaram, Jürgen Bajorath, Ralph E. Christoffersen, James D. Petke, W. Jeffrey Howe, Mark A. Johnson, Dimitris K. Agrafiotis, Pil Lee, Leslie A. Kuhn, Jay T. Goodwin, M. Katharine Holloway, Thompson N. Doman, W. Patrick Walters, Suzanne K. Schreyer, José L. Medina-Franco, Karina Martínez-Mayorga, Linda L. Restifo
Epilogue to the Gerald Maggiora Festschrift: a tribute to an exemplary mentor, colleague, collaborator, and innovator. J. Comput. Aided Mol. Des. 36 (9) (2022)
José L. Medina-Franco, Karina Martínez-Mayorga, Eli Fernández-de Gortari, Johannes Kirchmair, Jürgen Bajorath
Rationality over fashion and hype in drug design. F1000Research 10 (2021)
Fidele Ntie-Kang, Kiran K. Telukunta, Serge A. T. Fobofou, Victor Chukwudi Osamor, Samuel A. Egieyeh, Marilia Valli, Yannick Djoumbou Feunang, Maria Sorokina, Conrad Stork, Neann Mathai, Paul F. Zierep, Ana L. Chávez-Hernández, Miquel Duran-Frigola, Smith B. Babiaka, Romuald Tematio Fouedjou, Donatus B. Eni, Simeon Akame, Augustine B. Arreyetta-Bawak, Oyere T. Ebob, Jonathan A. Metuge, Boris D. Bekono, Mustafa A. Isa, Raphael Onuku, Daniel M. Shadrack, Thommas M. Musyoka, Vaishali M. Patil, Justin J. J. van der Hooft, Vanderlan da Silva Bolzani, José L. Medina-Franco, Johannes Kirchmair, Tilmann Weber, Özlem Tastan Bishop, Marnix H. Medema, Ludger A. Wessjohann, Jutta Ludwig-Müller
Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop. J. Cheminformatics 13 (1) (2021)
Norberto Sánchez-Cruz, José L. Medina-Franco
Epigenetic Target Profiler: A Web Server to Predict Epigenetic Targets of Small Molecules. J. Chem. Inf. Model. 61 (4) (2021)
Edgar López-López, Jürgen Bajorath, José L. Medina-Franco
Informatics for Chemistry, Biology, and Biomedical Sciences. J. Chem. Inf. Model. 61 (1) (2021)
Norberto Sánchez-Cruz, José L. Medina-Franco, Jordi Mestres, Xavier Barril
Extended connectivity interaction features: improving binding affinity prediction through chemical description. Bioinform. 37 (10) (2021)
José L. Medina-Franco
Expanding the Chemical Information Science gateway. F1000Research 10 (2021)
Fernanda I. Saldívar-González, C. Sebastian Huerta-García, José L. Medina-Franco
Chemoinformatics-based enumeration of chemical libraries: a tutorial. J. Cheminformatics 12 (1) (2020)
Edgar López-López, Obdulia Rabal, Julen Oyarzabal, José L. Medina-Franco
Towards the understanding of the activity of G9a inhibitors: an activity landscape and molecular modeling approach. J. Comput. Aided Mol. Des. 34 (6) (2020)
Gerald M. Maggiora, José L. Medina-Franco, Javed Iqbal, Martin Vogt, Jürgen Bajorath
From Qualitative to Quantitative Analysis of Activity and Property Landscapes. J. Chem. Inf. Model. 60 (12) (2020)
J. Jesús Naveja, B. Angélica Pilón-Jiménez, Jürgen Bajorath, José L. Medina-Franco
A general approach for retrosynthetic molecular core analysis. J. Cheminformatics 11 (1) (2019)
Fernanda I. Saldívar-González, Marilia Valli, Adriano D. Andricopulo, Vanderlan da Silva Bolzani, José L. Medina-Franco
Chemical Space and Diversity of the NuBBE Database: A Chemoinformatic Characterization. J. Chem. Inf. Model. 59 (1) (2019)
J. Jesús Naveja, Dagmar Stumpfe, José L. Medina-Franco, Jürgen Bajorath
Exploration of Target Synergy in Cancer Treatment by Cell-Based Screening Assay and Network Propagation Analysis. J. Chem. Inf. Model. 59 (6) (2019)
Norberto Sánchez-Cruz, José L. Medina-Franco
Statistical-based database fingerprint: chemical space dependent representation of compound databases. J. Cheminformatics 10 (1) (2018)
J. Jesús Naveja, Mariel P. Rico-Hidalgo, José L. Medina-Franco
Analysis of a large food chemical database: chemical space, diversity, and complexity. F1000Research 7 (2018)
Mariana González-Medina, José L. Medina-Franco
Platform for Unified Molecular Analysis: PUMA. J. Chem. Inf. Model. 57 (8) (2017)
Eli Fernández-de Gortari, César R. García-Jacas, Karina Martínez-Mayorga, José L. Medina-Franco
Database fingerprint (DFP): an approach to represent molecular databases. J. Cheminformatics 9 (1) (2017)
Mariana González-Medina, Oscar Méndez-Lucio, José L. Medina-Franco
Activity Landscape Plotter: A Web-Based Application for the Analysis of Structure-Activity Relationships. J. Chem. Inf. Model. 57 (3) (2017)
J. Jesús Naveja, José L. Medina-Franco
ChemMaps: Towards an approach for visualizing the chemical space based on adaptive satellite compounds. F1000Research 6 (2017)
Mariana González-Medina, Fernando D. Prieto-Martínez, John R. Owen, José L. Medina-Franco
Consensus Diversity Plots: a global diversity analysis of chemical libraries. J. Cheminformatics 8 (1) (2016)
Oscar Méndez-Lucio, Albert J. Kooistra, Chris de Graaf, Andreas Bender, José L. Medina-Franco
Analyzing Multitarget Activity Landscapes Using Protein-Ligand Interaction Fingerprints: Interaction Cliffs. J. Chem. Inf. Model. 55 (2) (2015)
Rosa L. Camacho-Mendoza, Evelin Gutiérrez-Moreno, Edmundo Guzmán-Percástegui, Eliazar Aquino-Torres, Julián Cruz-Borbolla, José A. Rodríguez-Ávila, José G. Alvarado-Rodríguez, Oscar Olvera-Neria, Pandiyan Thangarasu, José L. Medina-Franco
Density Functional Theory and Electrochemical Studies: Structure-Efficiency Relationship on Corrosion Inhibition. J. Chem. Inf. Model. 55 (11) (2015)
Rajarshi Guha, José L. Medina-Franco
On the validity versus utility of activity landscapes: are all activity cliffs statistically significant? J. Cheminformatics 6 (1) (2014)
Radleigh Santos, Marc A. Giulianotti, Richard A. Houghten, José L. Medina-Franco
Conditional Probabilistic Analysis for Prediction of the Activity Landscape and Relative Compound Activities. J. Chem. Inf. Model. 53 (10) (2013)
José L. Medina-Franco, Bruce S. Edwards, Clemencia Pinilla, Jon R. Appel, Marc A. Giulianotti, Radleigh Santos, Austin B. Yongye, Larry A. Sklar, Richard A. Houghten
Rapid Scanning Structure-Activity Relationships in Combinatorial Data Sets: Identification of Activity Switches. J. Chem. Inf. Model. 53 (6) (2013)
Thomas Scior, Andreas Bender, Gary Tresadern, José L. Medina-Franco, Karina Martínez-Mayorga, Thierry Langer, Karina Cuanalo-Contreras, Dimitris K. Agrafiotis
Recognizing Pitfalls in Virtual Screening: A Critical Review. J. Chem. Inf. Model. 52 (4) (2012)
Austin B. Yongye, José L. Medina-Franco
Data Mining of Protein-Binding Profiling Data Identifies Structural Modifications that Distinguish Selective and Promiscuous Compounds. J. Chem. Inf. Model. 52 (9) (2012)
Jakyung Yoo, José L. Medina-Franco
Computer-guided discovery of epigenetics drugs: molecular modeling and identification of inhibitors of DNMT1. J. Cheminformatics 4 (S-1) (2012)
José L. Medina-Franco, Austin B. Yongye, Jaime Pérez-Villanueva, Richard A. Houghten, Karina Martínez-Mayorga
Activity-difference maps and consensus similarity measure characterize structure-activity relationships. J. Cheminformatics 4 (S-1) (2012)
Fabian López-Vallejo, Jacob Waddell, Austin B. Yongye, Richard A. Houghten, José L. Medina-Franco
A large scale classification of molecular fingerprints for the chemical space representation and SAR analysis. J. Cheminformatics 4 (S-1) (2012)
José L. Medina-Franco
. J. Chem. Inf. Model. 52 (10) (2012)
Jakyung Yoo, José L. Medina-Franco
Homology modeling, docking and structure-based pharmacophore of inhibitors of DNA methyltransferase. J. Comput. Aided Mol. Des. 25 (6) (2011)
Austin B. Yongye, Kendall G. Byler, Radleigh Santos, Karina Martínez-Mayorga, Gerald M. Maggiora, José L. Medina-Franco
Consensus Models of Activity Landscapes with Multiple Chemical, Conformer, and Property Representations. J. Chem. Inf. Model. 51 (6) (2011)
John R. Owen, Ian T. Nabney, José L. Medina-Franco, Fabian López-Vallejo
Visualization of Molecular Fingerprints. J. Chem. Inf. Model. 51 (7) (2011)
José L. Medina-Franco, Austin B. Yongye, Jaime Pérez-Villanueva, Richard A. Houghten, Karina Martínez-Mayorga
Multitarget Structure-Activity Relationships Characterized by Activity-Difference Maps and Consensus Similarity Measure. J. Chem. Inf. Model. 51 (9) (2011)
José L. Medina-Franco, Karina Martínez-Mayorga, Andreas Bender, Ray M. Marín, Marc A. Giulianotti, Clemencia Pinilla, Richard A. Houghten
. J. Chem. Inf. Model. 49 (2) (2009)
Narender Singh, Rajarshi Guha, Marc A. Giulianotti, Clemencia Pinilla, Richard A. Houghten, José L. Medina-Franco
Chemoinformatic Analysis of Combinatorial Libraries, Drugs, Natural Products, and Molecular Libraries Small Molecule Repository. J. Chem. Inf. Model. 49 (4) (2009)
José L. Medina-Franco, Alexander Golbraikh, Scott Oloff, Rafael Castillo, Alexander Tropsha
Nearest Neighbor Method and QSAR-based Database Mining. J. Comput. Aided Mol. Des. 19 (4) (2005)
José L. Medina-Franco, Sergio Rodríguez-Morales, Cecilia Juárez-Gordiano, Alicia Hernández-Campos, Rafael Castillo
Docking-based CoMFA and CoMSIA studies of non-nucleoside reverse transcriptase inhibitors of the pyridinone derivative type. J. Comput. Aided Mol. Des. 18 (5) (2004)