Sepideh Babaei

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 6

Top Venues

BMC Bioinform.

Frontiers Bioinform.

Patterns

PLoS Comput. Biol.

Delft University of Technology, Netherlands (PHD)

Education History

Delft University of Technology, Netherlands

PHD

Publications

Sepideh Babaei, Jonathan Christ, Vivek Sehra, Ahmad Makky, Mohammed Zidane, Kilian Wistuba-Hamprecht, Christian M. Schürch, Manfred Claassen
-CIMA: Supervised spatial single-cell image analysis for identifying disease-associated cell-type compositions in tissue. Patterns 4 (9) (2023)
Mohammed Zidane, Ahmad Makky, Matthias Bruhns, Alexander Rochwarger, Sepideh Babaei, Manfred Claassen, Christian M. Schürch
Corrigendum: A review on deep learning applications in highly multiplexed tissue imaging data analysis. Frontiers Bioinform. 3 (2023)
Mohammed Zidane, Ahmed Al Makky, Matthias Bruhns, Alexander Rochwarger, Sepideh Babaei, Manfred Claassen, Christian M. Schürch
A review on deep learning applications in highly multiplexed tissue imaging data analysis. Frontiers Bioinform. 3 (2023)
Erdogan Taskesen, Sepideh Babaei, Marcel J. T. Reinders, Jeroen de Ridder
Integration of gene expression and DNA-methylation profiles improves molecular subtype classification in acute myeloid leukemia. BMC Bioinform. 16 (S-4) (2015)
Sepideh Babaei, Ahmed Mahfouz, Marc Hulsman, Boudewijn P. F. Lelieveldt, Jeroen de Ridder, Marcel J. T. Reinders
Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex. PLoS Comput. Biol. 11 (5) (2015)
Margherita Francescatto, Susanne M. A. Hermans, Sepideh Babaei, Esmeralda Vicedo, Alexandre Borrel, Pieter Meysman
Highlights from the Third European International Society for Computational Biology (ISCB) Student Council Symposium 2014. BMC Bioinform. 16 (S-3) (2015)
Sepideh Babaei, Marc Hulsman, Marcel J. T. Reinders, Jeroen de Ridder
Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion. BMC Bioinform. 14 (2013)
Sepideh Babaei, Amir Geranmayeh, Seyyed Ali Seyyedsalehi
Towards designing modular recurrent neural networks in learning protein secondary structures. Expert Syst. Appl. 39 (6) (2012)
Sepideh Babaei, Erik van den Akker, Jeroen de Ridder, Marcel J. T. Reinders
Integrating Protein Family Sequence Similarities with Gene Expression to Find Signature Gene Networks in Breast Cancer Metastasis. PRIB (2011)
Sepideh Babaei, Amir Geranmayeh, Seyyed Ali Seyyedsalehi
Protein secondary structure prediction using modular reciprocal bidirectional recurrent neural networks. Comput. Methods Programs Biomed. 100 (3) (2010)
Sepideh Babaei, Amir Geranmayeh
Heart sound reproduction based on neural network classification of cardiac valve disorders using wavelet transforms of PCG signals. Comput. Biol. Medicine 39 (1) (2009)
Sepideh Babaei, Seyyed Ali Seyyedsalehi, Amir Geranmayeh
Pruning neural networks for protein secondary structure prediction. BIBE (2008)

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Publication Activity (10 Years)

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Sepideh Babaei