Neri Niccolai

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 7

Top Topics

Protein Sequences

Experimentally Determined

Discrete Geometry

Physicochemical Properties

Top Venues

J. Bioinform. Comput. Biol.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Sara Marziali, Giacomo Nunziati, Alessia Lucia Prete, Neri Niccolai, Monica Bianchini
SADIC v2: A modern implementation of the Simple Atom Depth Index Calculator. SoftwareX 27 (2024)
Sara Marziali, Giacomo Nunziati, Alessia Lucia Prete, Neri Niccolai, Sara Brunetti, Monica Bianchini
A Discrete Geometry Method for Atom Depth Computation in Complex Molecular Systems. DGMM (2024)
Pietro Bongini, Neri Niccolai, Alfonso Trezza, Guido Mangiavacchi, Annalisa Santucci, Ottavia Spiga, Monica Bianchini, Simone Gardini
Structural Bioinformatic Survey of Protein-Small Molecule Interfaces Delineates the Role of Glycine in Surface Pocket Formation. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (3) (2022)
Pietro Bongini, Simone Gardini, Monica Bianchini, Ottavia Spiga, Neri Niccolai
Structural bioinformatics survey on disease-inducing missense mutations. J. Bioinform. Comput. Biol. 19 (3) (2021)
Anna Visibelli, Pietro Bongini, Alberto Rossi, Neri Niccolai, Monica Bianchini
A deep attention network for predicting amino acid signals in the formation of α-helices. J. Bioinform. Comput. Biol. 18 (5) (2020)
Pietro Bongini, Neri Niccolai, Monica Bianchini
Glycine-induced formation and druggability score prediction of protein surface pockets. J. Bioinform. Comput. Biol. 17 (5) (2019)
Andrea Bernini, Silvia Galderisi, Ottavia Spiga, Giulia Bernardini, Neri Niccolai, Fabrizio Manetti, Annalisa Santucci
Toward a generalized computational workflow for exploiting transient pockets as new targets for small molecule stabilizers: Application to the homogentisate 1, 2-dioxygenase mutants at the base of rare disease Alkaptonuria. Comput. Biol. Chem. 70 (2017)
Silvia Bottini, Andrea Bernini, Matteo De Chiara, Diego Garlaschelli, Ottavia Spiga, Marco Dioguardi, Elisa Vannuccini, Anna Tramontano, Neri Niccolai
ProCoCoA: A quantitative approach for analyzing protein core composition. Comput. Biol. Chem. 43 (2013)
Daniele Varrazzo, Andrea Bernini, Ottavia Spiga, Arianna Ciutti, Stefano Chiellini, Vincenzo Venditti, Luisa Bracci, Neri Niccolai
Three-dimensional computation of atom depth in complex molecular structures. Bioinform. 21 (12) (2005)