Lonnie R. Welch

ORCID

Publication Activity (10 Years)

Years Active: 1992-2020
Publications (10 Years): 7

Top Venues

PLoS Comput. Biol.

Bioinform.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Alastair M. Kilpatrick, Audra Anjum, Lonnie R. Welch
Ten simple rules for designing learning experiences that involve enhancing computational biology Wikipedia articles. PLoS Comput. Biol. 16 (5) (2020)
Yichao Li, Yating Liu, David Juedes, Frank Drews, Razvan C. Bunescu, Lonnie R. Welch
Set cover-based methods for motif selection. Bioinform. 36 (4) (2020)
Nicola J. Mulder, Russell Schwartz, Michelle D. Brazas, Cath Brooksbank, Bruno A. Gaëta, Sarah L. Morgan, Mark A. Pauley, Anne G. Rosenwald, Gabriella Rustici, Michael L. Sierk, Tandy J. Warnow, Lonnie R. Welch
The development and application of bioinformatics core competencies to improve bioinformatics training and education. PLoS Comput. Biol. 14 (2) (2018)
Milana Frenkel-Morgenstern, Lonnie R. Welch, Bruno A. Gaëta, Diane E. Kovats
Art in Science Competition invites artworks to the annual exhibition on ISMB 2018 in Chicago. PLoS Comput. Biol. 14 (5) (2018)
Rami Al-ouran, Robert Schmidt, Ashwini Naik, Jeffrey Jones, Frank Drews, David W. Juedes, Laura Elnitski, Lonnie R. Welch
Discovering Gene Regulatory Elements Using Coverage-Based Heuristics. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (4) (2018)
Bruno A. Gaëta, Javier De Las Rivas, Paul Horton, Pieter Meysman, Nicola J. Mulder, Paolo Romano, Lonnie R. Welch
Ten simple rules for forming a scientific professional society. PLoS Comput. Biol. 13 (3) (2017)
Lonnie R. Welch, Cath Brooksbank, Russell Schwartz, Sarah L. Morgan, Bruno A. Gaëta, Alastair M. Kilpatrick, Daniel Mietchen, Benjamin L. Moore, Nicola J. Mulder, Mark A. Pauley, William R. Pearson, Predrag Radivojac, Naomi Rosenberg, Anne G. Rosenwald, Gabriella Rustici, Tandy J. Warnow
Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee). PLoS Comput. Biol. 12 (5) (2016)
Jim Cavalcoli, Lonnie R. Welch, Bruce J. Aronow, Sorin Draghici, Daisuke Kihara
The International Society of Computational Biology presents: the Great Lakes Bioinformatics Conference, May 16-18, 2014, Cincinnati, Ohio. Bioinform. 30 (1) (2014)
Lonnie R. Welch, Fran Lewitter, Russell Schwartz, Catherine Brooksbank, Predrag Radivojac, Bruno A. Gaëta, Maria Victoria Schneider
Bioinformatics Curriculum Guidelines: Toward a Definition of Core Competencies. PLoS Comput. Biol. 10 (3) (2014)
Lonnie R. Welch, Russell Schwartz, Fran Lewitter
A Report of the Curriculum Task Force of the ISCB Education Committee. PLoS Comput. Biol. 8 (6) (2012)
Alper Yilmaz, Maria Katherine Mejia-Guerra, Kyle Kurz, Xiaoyu Liang, Lonnie R. Welch, Erich Grotewold
AGRIS: the Arabidopsis Gene Regulatory Information Server, an update. Nucleic Acids Res. 39 (Database-Issue) (2011)
Laura Elnitski, Jens Lichtenberg, Lonnie R. Welch
in DNA repair pathways. BCB (2010)
Jens Lichtenberg, Kyle Kurz, Xiaoyu Liang, Rami Al-ouran, Lev Neiman, Lee J. Nau, Joshua D. Welch, Edwin Jacox, Thomas Bitterman, Klaus Ecker, Laura Elnitski, Frank Drews, Stephen Lee, Lonnie R. Welch
WordSeeker: concurrent bioinformatics software for discovering genome-wide patterns and word-based genomic signatures. BMC Bioinform. 11 (S-12) (2010)
Frank Drews, Jens Lichtenberg, Lonnie R. Welch
Scalable parallel word search in multicore/multiprocessor systems. J. Supercomput. 51 (1) (2010)
Klaus Ecker, Jens Lichtenberg, Lonnie R. Welch
The SiteSeeker Motif Discovery Tool. Silico Biol. 9 (1-2) (2009)
Klaus H. Ecker, Lonnie R. Welch
A Concept for ab initio Prediction of cis-regulatory Modules. Silico Biol. 9 (5-6) (2009)
Jens Lichtenberg, Paul Morris, Klaus Ecker, Lonnie R. Welch
Discovery of Regulatory Elements in Oomycete Orthologs. BIOCOMP (2008)
Klaus Ecker, Jens Lichtenberg, Lonnie R. Welch
The SiteSeeker Motif Discovery Tool. BIOCOMP (2008)
Frank Drews, Eric Petri, Jens Lichtenberg, Lonnie R. Welch
Scalable Parallel Word Search in Multi-Core/Multiprocessor Systems. BIOCOMP (2008)
Jens Lichtenberg, Edwin Jacox, Mary Qu Yang, Laura Elnitski, Lonnie R. Welch
Word-Based Characterization of the Bidirectional Promoters from the Human DNA-Repair Pathway. BIOCOMP (2008)
Laura Elnitski, Lonnie R. Welch
New Frontiers in Computational Genomics: Identification of Novel Functional Elements and Genome-scale Pattern Analysis. Scalable Comput. Pract. Exp. 8 (3) (2007)
Charles Cavanaugh, Frank Drews, Lonnie R. Welch
Guest Editor's introduction. J. Syst. Softw. 80 (7) (2007)
Klaus H. Ecker, Lonnie R. Welch, Dazhang Gu
SiteSeeker - A Motif Discovery Tool. BIBE (2007)
Dazhang Gu, Lonnie R. Welch, Frank Drews, Klaus Ecker
Characterizing robustness in dynamic real-time systems. J. Syst. Softw. 80 (7) (2007)
Zhenyu Tan, William Leal, Lonnie R. Welch
Verification of instrumentation techniques for resource management of real-time systems. J. Syst. Softw. 80 (7) (2007)
Edward O. List, Darlene E. Berryman, Amanda J. Palmer, Elahu Gosney, Shigeru Okada, Bruce Kelder, Jens Lichtenberg, Lonnie R. Welch, John J. Kopchick
Application of bioinformatics and scalable computing to perform proteomic analysis of stomach tissue from diabetic mice. Scalable Comput. Pract. Exp. 8 (2) (2007)
Eui-nam Huh, Lonnie R. Welch
Adaptive resource management for dynamic distributed real-time applications. J. Supercomput. 38 (2) (2006)
David W. Juedes, Frank Drews, Dazhang Gu, Lonnie R. Welch, Klaus H. Ecker, Silke Schomann
Approximation algorithm for periodic real-time tasks with workload-dependent running-time functions. Real Time Syst. 34 (3) (2006)
Hang Zhao, Dazhang Gu, Lonnie R. Welch, Frank Drews, David W. Juedes
Stable Allocations in Distributed Real-Time Systems with Multiple Environmental Parameters and Replicable Applications. IPDPS (2005)
Robert Judd, F. Drews, Douglas Lawrence, David Juedes, B. Leal, J. Deshpande, Lonnie R. Welch
QoS-based resource allocation in dynamic real-time systems. ACC (2005)
Zhenyu Tan, Lonnie R. Welch, William Leal, Michael W. Masters
Toward System Certification of Real-Time Resource Management Middleware. ESA (2005)
Kevin Bryan, Lisa Cingiser DiPippo, Victor Fay Wolfe, Matthew Murphy, Jiangyin Zhang, Douglas Niehaus, David Fleeman, David W. Juedes, Chang Liu, Lonnie R. Welch, Christopher D. Gill
Integrated CORBA Scheduling and Resource Management for Distributed Real-Time Embedded Systems. IEEE Real-Time and Embedded Technology and Applications Symposium (2005)
Dazhang Gu, Frank Drews, Lonnie R. Welch
Robust Task Allocation for Dynamic Distributed Real-Time Systems Subject to Multiple Environmental Parameters. ICDCS (2005)
Dazhang Gu, Lin Yang, Lonnie R. Welch
A Predictive, Decentralized Load Balancing Approach. IPDPS (2005)
David W. Juedes, Frank Drews, Lonnie R. Welch, David Fleeman
Heuristic Resource Allocation Algorithms for Maximizing Allowable Workload in Dynamic, Distributed Real-Time Systems. IPDPS (2004)
Frank Drews, David W. Juedes, David Fleeman, Andreas Brüning, Klaus H. Ecker, Martin Hoefer, Lonnie R. Welch
Utility-Function Based Resource Allocation for Adaptable Applications in Dynamic, Distributed Real-Time Systems. IPDPS (2004)
David Fleeman, Matthew Gillen, Andrew Lenharth, M. Delaney, Lonnie R. Welch, David W. Juedes, Chang Liu
Quality-Based Adaptive Resource Management Architecture (QARMA): A CORBA Resource Management Service. IPDPS (2004)
Qiang Zhou, David Parrott, Matthew Gillen, David M. Chelberg, Lonnie R. Welch
Agent-based computer vision in a dynamic, real-time environment. Pattern Recognit. 37 (4) (2004)
Lin Yang, Jundong Liu, Charles Cavanaugh, Lonnie R. Welch
A L2E-Based QoS Forecasting Algorithm for Dynamic, Distributed Real-Time Systems. PDPTA (2003)
Klaus H. Ecker, David W. Juedes, Lonnie R. Welch, David M. Chelberg, Carl Bruggeman, Frank Drews, David Fleeman, David Parrott, Barbara Pfarr
An Optimization Framework for Dynamic, Distributed Real-Time Systems. IPDPS (2003)
Lonnie R. Welch
An Approach for On-line Performance Certification. IPDPS (2003)
Frank Drews, Lonnie R. Welch
An Architecture and a General Optimization Framework for Resource Management in Dynamic, Distributed Real-Time Systems. WORDS Fall (2003)
Dazhang Gu, Lonnie R. Welch, Carl Bruggeman, Robert Shelly
The Applicability of Social Models for Self-Organizing Real-Time Systems. IPDPS (2003)
Shikha Jain, Lonnie R. Welch, David M. Chelberg, Zhenyu Tan, David Fleeman, David Parrott, Barbara Pfarr, Mei C. Liu, Chris Shuler
Collaborative Problem Solving Agent for on Board Real-Time Systems. IPDPS (2002)
David L. Andrews, Lonnie R. Welch, David M. Chelberg, Scott A. Brandt
A Framework for Using Benefit Functions In Complex Real Time Systems. IPDPS (2002)
Hong Chen, Brett C. Tjaden, Lonnie R. Welch, Carl Bruggeman, Lu Tong, Barbara Pfarr
Monitoring Network QoS in a Dynamic Real-Time System. IPDPS (2002)
Eui-nam Huh, Lonnie R. Welch, Barbara Pfarr
An Efficient Schedulability Analysis Policing Technique for Periodic, Dynamic Real-Time Applications. IPDPS (2002)
Eui-nam Huh, Lonnie R. Welch, Youngsong Mun
Real-Time Performance Estimation for Dynamic, Distributed Real-Time Systems. International Conference on Computational Science (3) (2002)
David L. Andrews, Ravi Vemuri, David M. Chelberg, David Fleeman, David Parrott, Lonnie R. Welch, Scott A. Brandt
A Framework for using benefit functions in complex real-time systems. Scalable Comput. Pract. Exp. 5 (1) (2002)
Shikha Jain, Lonnie R. Welch, Barbara Pfarr, David M. Chelberg, Carl Bruggeman, David Fleeman, David Parrott, Zhenyu Tan, M. McCoy, Chris Shuler
Management of Application QOS-level Adaptation for Real-Time Systems. Scalable Comput. Pract. Exp. 5 (1) (2002)
Eui-nam Huh, Anbuselvan Neelamegam, Lonnie R. Welch, H. Park, Barbara Pfarr
Worst-Case Analysis for Real-Time Processes in Time-Sharing Environments. Scalable Comput. Pract. Exp. 5 (1) (2002)
David M. Chelberg, Lonnie R. Welch, Cynthia R. Marling, Carl Bruggeman, Douglas Lawrence, David W. Matolak, Robert L. Williams II, Jae Y. Lew, Arvind Lakshmikumar, Matthew Gillen, Qiang Zhou, Barbara Pfarr
A Dynamic, Real-Time Testbed for Resource Management Technology. IPDPS (2001)
Michael W. Masters, Lonnie R. Welch
Challenges for Building Complex Real-time Computing Systems. Scalable Comput. Pract. Exp. 4 (2) (2001)
Brett C. Tjaden, Lonnie R. Welch
Security for Mission Critical Real-Time Systems. Scalable Comput. Pract. Exp. 4 (2) (2001)
Binoy Ravindran, Lonnie R. Welch, Behrooz A. Shirazi
Resource Management Middleware for Dynamic, Dependable Real-Time Systems. Real Time Syst. 20 (2) (2001)
Charles Cavanaugh, Lonnie R. Welch, Behrooz A. Shirazi
Towards a Characterization of Quality of Service Management Approaches in Distributed, Real-time Systems. IPDPS (2001)
Lu Tong, Carl Bruggeman, Brett C. Tjaden, Hong Chen, Lonnie R. Welch
Specification and Modeling of Network Resources in Dynamic, Distributed Real-time System. PDCS (2001)
Yongjun Zhou, Lonnie R. Welch, Eui-nam Huh, Charles T. Alexander, Douglas Lawrence, Shruti Mehta, Charles Cavanaugh
Important Considerations for Execution time Analysis of Dynamic, Periodic Processes. IPDPS (2001)
Lonnie R. Welch, Scott A. Brandt
Toward a Realization of the Value of Benefit in Real-Time Systems. IPDPS (2001)
Kazi M. Jahirul Islam, Behrooz A. Shirazi, Lonnie R. Welch, Brett C. Tjaden, Charles Cavanaugh, Shafqat Anwar
Network Load Monitoring in Distributed Systems. IPDPS Workshops (2000)
Eui-nam Huh, Lonnie R. Welch, Behrooz A. Shirazi, Brett C. Tjaden, Charles Cavanaugh
Accommodating QoS Prediction in an Adaptive Resource Management Framework. IPDPS Workshops (2000)
Eui-nam Huh, Lonnie R. Welch, Behrooz A. Shirazi, Charles Cavanaugh
Heterogeneous Resource Management for Dynamic Real-Time Systems. Heterogeneous Computing Workshop (2000)
David R. Alexander, Douglas Lawrence, Lonnie R. Welch
Feedback control resource management using a posteriori workload characterizations. CDC (2000)
Behrooz A. Shirazi, Lonnie R. Welch, Binoy Ravindran, Charles Cavanaugh, Eui-nam Huh
DynBench: A Benchmark Suite for Dynamic Real-Time Systems. Scalable Comput. Pract. Exp. 3 (1) (2000)
Charles Cavanaugh, Lonnie R. Welch, Behrooz A. Shirazi, Eui-nam Huh, Shafqat Anwar
Quality of Service Negotiation for Distributed, Dynamic Real-Time Systems. IPDPS Workshops (2000)
Lonnie R. Welch, Paul V. Werme, Behrooz A. Shirazi, Charles Cavanaugh, Larry A. Fontenot, Eui-nam Huh, Michael W. Masters
Load balancing for dynamic real-time systems. Clust. Comput. 3 (2) (2000)
Devesh Bhatt, Lonnie R. Welch
Workshop on Embedded/Distributed HPC Systems and Applications (EHPC 2000). IPDPS Workshops (2000)
Lonnie R. Welch, Behrooz A. Shirazi
A Dynamic Real-Time Benchmark for Assessment of QoS and Resource Management Technology. IEEE Real Time Technology and Applications Symposium (1999)
Behrooz A. Shirazi, Lonnie R. Welch, Binoy Ravindran, Charles Cavanaugh, Barath Yanamula, Russ Brucks, Eui-nam Huh
DynBench: A Dynamic Benchmark Suite for Distributed Real-Time Systems. IPPS/SPDP Workshops (1999)
Lonnie R. Welch, Paul V. Werme, Larry A. Fontenot, Michael W. Masters, Behrooz A. Shirazi, Binoy Ravindran, D. Wayne Mills
Adaptive QoS and Resource Management using a Posteriori Workload Characterizations. IEEE Real Time Technology and Applications Symposium (1999)
Lonnie R. Welch, Michael W. Masters, Leslie A. Madden, David T. Marlow, Philip M. Irey IV, Paul V. Werme, Behrooz A. Shirazi
A Distributed System Reference Architecture for Adaptive QoS and Resource Management. IPPS/SPDP Workshops (1999)
Lonnie R. Welch, Binoy Ravindran, Paul V. Werme, Michael W. Masters, Behrooz A. Shirazi, Prashant A. Shirolkar, Robert D. Harrison, D. Wayne Mills, Tuy Do, Judy Lafratta, Shafqat Anwar, Steve Sharp, Terry Sergeant, George Bilowus, Mark Swick, Jim Hoppel, Joseph M. Caruso
Distributed, Scalable, Dependable Real-Time Systems: Middleware Services and Applications. IPPS/SPDP (1999)
Lonnie R. Welch, Binoy Ravindran, Behrooz A. Shirazi, Carl Bruggeman
Specification and Modeling of Dynamic, Distributed Real-Time Systems. RTSS (1998)
Binoy Ravindran, Lonnie R. Welch, Carl Bruggeman, Behrooz A. Shirazi, Charles Cavanaugh
A Resource Management Model for Dynamic, Scalable, Dependable, Real-Time Systems. IPPS/SPDP Workshops (1998)
Lonnie R. Welch
Open Problems in the Distributed Control Systems Domain. Scalable Comput. Pract. Exp. 1 (2) (1998)
Lonnie R. Welch, Dieter K. Hammer
Engineering of Distributed Control Systems. Scalable Comput. Pract. Exp. 1 (2) (1998)
Dieter K. Hammer, Heonshik Shin, Lonnie R. Welch
Editorial. Real Time Syst. 14 (1) (1998)
Franz J. Kurfess, Mrinalini Lankala, Ashok Vantipalli, Lonnie R. Welch
A toolset for the reengineering of complex computer systems. ECBS (1997)
Binoy Ravindran, Lonnie R. Welch, Christian Kelling
Building Distributed Scalable Dependable Real-TimeSystems. ECBS (1997)
Lonnie R. Welch, Mrinalini Lankala, William H. Farr, Dieter K. Hammer
Metrics for Quality and Concurrency in Object-Based Systems. Ann. Softw. Eng. 2 (1996)
Dieter K. Hammer, Onno S. van Roosmalen, Lonnie R. Welch
Classifying Object-Oriented Real-time Systems: Ada 95 and Deal. ECBS (1996)
Dieter K. Hammer, Lonnie R. Welch
Special Issue on Object-Oriented Real-Time Systems: Guest Editor's Introduction. J. Parallel Distributed Comput. 36 (1) (1996)
Jack P. C. Verhoosel, Lonnie R. Welch, Dieter K. Hammer, Erik J. Luit
Incorporating Temporal Considerations during Assignment and Pre-run-time Scheduling of Objects and Processes. J. Parallel Distributed Comput. 36 (1) (1996)
Dieter K. Hammer, Lonnie R. Welch, Onno S. van Roosmalen
A taxonomy for distributed object-oriented real-time systems. OOPS Messenger 7 (1) (1996)
Lonnie R. Welch, Guohui Yu, Binoy Ravindran, Franz J. Kurfess, Jorge Henriques, Mark Wilson, Antonio L. Samuel, Michael W. Masters
Reverse Engineering of Computer-Based Control Systems. Int. J. Softw. Eng. Knowl. Eng. 6 (4) (1996)
Lonnie R. Welch
A metrics-driven approach for utilizing concurrency in object-oriented real-time systems. OOPS Messenger 7 (1) (1996)
Lonnie R. Welch, Dieter K. Hammer
Guest editor's introduction: ACM OOPS Messenger special issue on object-oriented real-time systems. OOPS Messenger 7 (1) (1996)
Franz J. Kurfess, Lonnie R. Welch
Categorization of Programs Using Neural Networks. ECBS (1996)
Binoy Ravindran, Lonnie R. Welch
Exploiting parallelism in high performance embedded system scheduling. HiPC (1996)
Guohui Yu, Lonnie R. Welch
A Novel Approach to Off-line Scheduling in Real-Time Systems. Informatica (Slovenia) 19 (1) (1995)
Lonnie R. Welch, Binoy Ravindran, Jorge Henriques, Dieter K. Hammer
Metrics and techniques for automatic partitioning and assignment of object-based concurrent programs. SPDP (1995)
Lonnie R. Welch, Antonio L. Samuel, Michael W. Masters, Robert D. Harrison, Mark Wilson, Joseph M. Caruso
Reengineering computer-based systems for enhanced concurrency and layering. J. Syst. Softw. 30 (1-2) (1995)
Jack P. C. Verhoosel, Dieter K. Hammer, Erik J. Luit, Lonnie R. Welch, Alexander D. Stoyenko
A Model for Scheduling of Object-Based, Distributed Real-Time Systems. Real Time Syst. 8 (1) (1995)
Lonnie R. Welch, Guohui Yu, Jack P. C. Verhoosel, J. A. Haney, Arthur L. Samuel, P. Ng
Metrics for Assessment of Designs and Implementations During Reengineering of Computer-Based Systems. Ann. Softw. Eng. 1 (1995)
Guohui Yu, Lonnie R. Welch
Program dependence analysis for concurrency exploitation in programs composed of abstract data type modules. SPDP (1994)
Alexander D. Stoyenko, Lonnie R. Welch, Bo-Chao Cheng
Response time prediction in object-based, parallel embedded systems. Microprocess. Microprogramming 40 (2-3) (1994)
Thomas J. Marlowe, Alexander D. Stoyenko, Stephen P. Masticola, Lonnie R. Welch
Schedulability-Analyzable Exception Handling for Fault-Tolerant Real-Time Languages. Real Time Syst. 7 (2) (1994)
Jack P. C. Verhoosel, Dieter K. Hammer, Erik J. Luit, Lonnie R. Welch
Assignment and pre-run-time scheduling of object-based, parallel real-time processes. SPDP (1994)
Lonnie R. Welch
A Parallel Virtual Machine for Programs Composed of Abstract Data Types. IEEE Trans. Computers 43 (11) (1994)
Murali Sitaraman, Lonnie R. Welch, Douglas E. Harms
On Specification of Reusable Software Components. Int. J. Softw. Eng. Knowl. Eng. 3 (2) (1993)

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Publication Activity (10 Years)

Top Topics

Top Venues

Lonnie R. Welch