Joshua D. Welch

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 8

Top Topics

Functional Genomics

Iterative Refinement

Drosophila Melanogaster

Gene Expression

Top Venues

Publications

Yichen Gu, Jialin Liu, Chen Li, Joshua D. Welch
Mapping Cell Fate Transition in Space and Time. RECOMB (2024)
Chen Li, Maria Virgilio, Kathleen L. Collins, Joshua D. Welch
Single-Cell Multi-omic Velocity Infers Dynamic and Decoupled Gene Regulation. RECOMB (2022)
Yichen Gu, David T. Blaauw, Joshua D. Welch
Variational Mixtures of ODEs for Inferring Cellular Gene Expression Dynamics. ICML (2022)
Yichen Gu, David T. Blaauw, Joshua D. Welch
Variational Mixtures of ODEs for Inferring Cellular Gene Expression Dynamics. CoRR (2022)
Lu Lu, Joshua D. Welch
PyLiger: scalable single-cell multi-omic data integration in Python. Bioinform. 38 (10) (2022)
Chao Gao, Joshua D. Welch
Iterative Refinement of Cellular Identity from Single-Cell Data Using Online Learning. RECOMB (2020)
Joshua D. Welch, Alexander J. Hartemink, Jan F. Prins
E Pluribus Unum: United States of Single Cells. RECOMB (2017)
Joshua D. Welch, Ziqing Liu, Li Wang, Junjie Lu, Paul Lerou, Jeremy E. Purvis, Li Qian, Alexander J. Hartemink, Jan F. Prins
SLICER: Inferring Branched, Nonlinear Cellular Trajectories from Single Cell RNA-seq Data. RECOMB (2016)
Jens Lichtenberg, Kyle Kurz, Xiaoyu Liang, Rami Al-ouran, Lev Neiman, Lee J. Nau, Joshua D. Welch, Edwin Jacox, Thomas Bitterman, Klaus Ecker, Laura Elnitski, Frank Drews, Stephen Lee, Lonnie R. Welch
WordSeeker: concurrent bioinformatics software for discovering genome-wide patterns and word-based genomic signatures. BMC Bioinform. 11 (S-12) (2010)