Jan F. Prins

Publication Activity (10 Years)

Years Active: 1982-2017
Publications (10 Years): 8

Top Topics

Heterogeneous Systems

Energy Efficiency

High Level Programming Languages

Motion Planning

Top Venues

IPDPS Workshops

J. Comput. Biol.

Publications

Jeffrey Ichnowski, Jan F. Prins, Ron Alterovitz
The Economic Case for Cloud-Based Computation for Robot Motion Planning. ISRR (2017)
Sridutt Bhalachandra, Allan Porterfield, Stephen L. Olivier, Jan F. Prins
An Adaptive Core-Specific Runtime for Energy Efficiency. IPDPS (2017)
Antón Rey, Francisco D. Igual, Manuel Prieto-Matías, Jan F. Prins
Performance and Scalability Study of FMM Kernels on Novel Multi- and Many-core Architectures. ICCS (2017)
Joshua D. Welch, Alexander J. Hartemink, Jan F. Prins
E Pluribus Unum: United States of Single Cells. RECOMB (2017)
Sridutt Bhalachandra, Allan Porterfield, Stephen L. Olivier, Jan F. Prins, Robert J. Fowler
Improving Energy Efficiency in Memory-constrained Applications Using Core-specific Power Control. E2SC@SC (2017)
Joshua D. Welch, Ziqing Liu, Li Wang, Junjie Lu, Paul Lerou, Jeremy E. Purvis, Li Qian, Alexander J. Hartemink, Jan F. Prins
SLICER: Inferring Branched, Nonlinear Cellular Trajectories from Single Cell RNA-seq Data. RECOMB (2016)
James E. McClure, Mark A. Berrill, Jan F. Prins, Cass T. Miller
Asynchronous In Situ Connected-Components Analysis for Complex Fluid flows. ISAV@SC (2016)
Jeffrey Ichnowski, Jan F. Prins, Ron Alterovitz
Cloud-based Motion Plan Computation for Power-Constrained Robots. WAFR (2016)
Sridutt Bhalachandra, Allan Porterfield, Jan F. Prins
Using Dynamic Duty Cycle Modulation to Improve Energy Efficiency in High Performance Computing. IPDPS Workshops (2015)
James E. McClure, Hao Wang, Jan F. Prins, Cass T. Miller, Wu-chun Feng
Petascale Application of a Coupled CPU-GPU Algorithm for Simulation and Analysis of Multiphase Flow Solutions in Porous Medium Systems. IPDPS (2014)
James E. McClure, Jan F. Prins, Cass T. Miller
A novel heterogeneous algorithm to simulate multiphase flow in porous media on multicore CPU-GPU systems. Comput. Phys. Commun. 185 (7) (2014)
Jeffrey Ichnowski, Jan F. Prins, Ron Alterovitz
Cache-aware asymptotically-optimal sampling-based motion planning. ICRA (2014)
Allan Porterfield, Stephen L. Olivier, Sridutt Bhalachandra, Jan F. Prins
Power Measurement and Concurrency Throttling for Energy Reduction in OpenMP Programs. IPDPS Workshops (2013)
Robert E. Overman, Jan F. Prins, Laura A. Miller, Michael L. Minion
Dynamic Load Balancing of the Adaptive Fast Multipole Method in Heterogeneous Systems. IPDPS Workshops (2013)
Stephen L. Olivier, Bronis R. de Supinski, Martin Schulz, Jan F. Prins
Characterizing and mitigating work time inflation in task parallel programs. Sci. Program. 21 (3-4) (2013)
Yan Huang, Yin Hu, Corbin D. Jones, James N. MacLeod, Derek Y. Chiang, Yufeng Liu, Jan F. Prins, Jinze Liu
A Robust Method for Transcript Quantification with RNA-Seq Data. J. Comput. Biol. 20 (3) (2013)
Stephen Olivier, Bronis R. de Supinski, Martin Schulz, Jan F. Prins
Characterizing and mitigating work time inflation in task parallel programs. SC (2012)
Yan Huang, Yin Hu, Corbin D. Jones, James N. MacLeod, Derek Y. Chiang, Yufeng Liu, Jan F. Prins, Jinze Liu
A Robust Method for Transcript Quantification with RNA-seq Data. RECOMB (2012)
Stephen Olivier, Allan Porterfield, Kyle B. Wheeler, Michael Spiegel, Jan F. Prins
OpenMP task scheduling strategies for multicore NUMA systems. Int. J. High Perform. Comput. Appl. 26 (2) (2012)
Darshan Singh, Christian F. Orellana, Yin Hu, Corbin D. Jones, Yufeng Liu, Derek Y. Chiang, Jinze Liu, Jan F. Prins
FDM: a graph-based statistical method to detect differential transcription using RNA-seq data. Bioinform. 27 (19) (2011)
Yin Hu, Kai Wang, Xiaping He, Derek Y. Chiang, Jan F. Prins, Jinze Liu
A probabilistic framework for aligning paired-end RNA-seq data. Bioinform. 26 (16) (2010)
Stephen Olivier, Jan F. Prins
Comparison of OpenMP 3.0 and Other Task Parallel Frameworks on Unbalanced Task Graphs. Int. J. Parallel Program. 38 (5-6) (2010)
Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha
Functional neighbors: inferring relationships between nonhomologous protein families using family-specific packing motifs. IEEE Trans. Inf. Technol. Biomed. 14 (5) (2010)
Stephen Olivier, Jan F. Prins
Evaluating OpenMP 3.0 Run Time Systems on Unbalanced Task Graphs. IWOMP (2009)
Deepak Bandyopadhyay, Jun Huan, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha
Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications. J. Comput. Aided Mol. Des. 23 (11) (2009)
Deepak Bandyopadhyay, Jun Huan, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha
Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development. J. Comput. Aided Mol. Des. 23 (11) (2009)
Michael Gschwind, Fred G. Gustavson, Jan F. Prins
High Performance Computing with the Cell Broadband Engine. Sci. Program. 17 (1-2) (2009)
Stephen Olivier, Jan F. Prins
Scalable Dynamic Load Balancing Using UPC. ICPP (2008)
James Dinan, Stephen Olivier, Gerald Sabin, Jan F. Prins, P. Sadayappan, Chau-Wen Tseng
A message passing benchmark for unbalanced applications. Simul. Model. Pract. Theory 16 (9) (2008)
Qi Zhang, Wei Wang, Leonard McMillan, Jan F. Prins, Fernando Pardo-Manuel de Villena, David Threadgill
Genotype Sequence Segmentation: Handling Constraints and Noise. WABI (2008)
Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha
Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs. BIBM (2008)
Stephen Olivier, Jan F. Prins, Jeff Derby, Ken V. Vu
Porting the GROMACS Molecular Dynamics Code to the Cell Processor. IPDPS (2007)
James Dinan, Stephen Olivier, Gerald Sabin, Jan F. Prins, P. Sadayappan, Chau-Wen Tseng
Dynamic Load Balancing of Unbalanced Computations Using Message Passing. IPDPS (2007)
Jinze Liu, Qi Zhang, Wei Wang, Leonard McMillan, Jan F. Prins
PoClustering: Lossless Clustering of Dissimilarity Data. SDM (2007)
Jinze Liu, Qi Zhang, Wei Wang, Leonard McMillan, Jan F. Prins
Clustering pair-wise dissimilarity data into partially ordered sets. KDD (2006)
Stephen Olivier, Jun Huan, Jinze Liu, Jan F. Prins, James Dinan, P. Sadayappan, Chau-Wen Tseng
UTS: An Unbalanced Tree Search Benchmark. LCPC (2006)
Jinze Liu, Susan Paulsen, Xing Sun, Wei Wang, Andrew B. Nobel, Jan F. Prins
Mining Approximate Frequent Itemsets In the Presence of Noise: Algorithm and Analysis. SDM (2006)
Jun Huan, Jan F. Prins, Wei Wang
Local Structure Comparison of Proteins. Adv. Comput. 68 (2006)
Jinze Liu, Susan Paulsen, Wei Wang, Andrew B. Nobel, Jan F. Prins
Mining Approximate Frequent Itemsets from Noisy Data. ICDM (2005)
Jun Huan, Deepak Bandyopadhyay, Wei Wang, Jack Snoeyink, Jan F. Prins, Alexander Tropsha
Comparing Graph Representations of Protein Structure for Mining Family-Specific Residue-Based Packing Motifs. J. Comput. Biol. 12 (6) (2005)
Jun Huan, Wei Wang, Deepak Bandyopadhyay, Jack Snoeyink, Jan F. Prins, Alexander Tropsha
Mining protein family specific residue packing patterns from protein structure graphs. RECOMB (2004)
Jun Huan, Wei Wang, Anglina Washington, Jan F. Prins, Ruchir Shah, Alexander Tropsha
Accurate Classification of Protein Structural Families Using Coherent Subgraph Analysis. Pacific Symposium on Biocomputing (2004)
Jun Huan, Wei Wang, Jan F. Prins, Jiong Yang
SPIN: mining maximal frequent subgraphs from graph databases. KDD (2004)
Konstantin Berlin, Jun Huan, Mary Jacob, Garima Kochhar, Jan F. Prins, William Pugh, P. Sadayappan, Jaime Spacco, Chau-Wen Tseng
Evaluating the Impact of Programming Language Features on the Performance of Parallel Applications on Cluster Architectures. LCPC (2003)
Jun Huan, Wei Wang, Jan F. Prins
Efficient Mining of Frequent Subgraphs in the Presence of Isomorphism. ICDM (2003)
Jun Huan, Jan F. Prins, Wei Wang, Todd J. Vision
Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss. CSB (2003)
James Riely, Jan F. Prins
Flattening Is an Improvement. SAS (2000)
Lars S. Nyland, Jan F. Prins, Allen Goldberg, Peter Mills
A Design Methodology for Data-Parallel Applications. IEEE Trans. Software Eng. 26 (4) (2000)
Jan F. Prins, Siddhartha Chatterjee, Martin Simons
Irregular computations in Fortran - expression and implementation strategies. Sci. Program. 7 (3-4) (1999)
Jan F. Prins, Jan Hermans, Geoffrey Mann, Lars S. Nyland, Martin Simons
A virtual environment for steered molecular dynamics. Future Gener. Comput. Syst. 15 (4) (1999)
Lars S. Nyland, Jan F. Prins, Ru Huai Yun, Jan Hermans, Hye-Chung Kum, Lei Wang
Modeling Dynamic Load Balancing in Molecular Dynamics to Achieve Scalable Parallel Execution. IRREGULAR (1998)
Jan F. Prins, Siddhartha Chatterjee, Martin Simons
Expressing Irregular Computations in Modern Fortran Dialects. LCR (1998)
Lars S. Nyland, Jan F. Prins, Ru Huai Yun, Jan Hermans, Hye-Chung Kum, Lei Wang
Achieving Scalable Parallel Molecular Dynamics Using Dynamic Spatial Domain Decomposition Techniques. J. Parallel Distributed Comput. 47 (2) (1997)
Rickard E. Faith, Lars S. Nyland, Jan F. Prins
KHEPERA: A System for Rapid Implementation of Domain Specific Languages. DSL (1997)
Lars S. Nyland, Jan F. Prins, Allen Goldberg, Peter Mills, John H. Reif, Robert A. Wagner
A Refinement Methodology for Developing Data-Parallel Applications. Euro-Par, Vol. I (1996)
Daniel W. Palmer, Jan F. Prins, Siddhartha Chatterjee, Rickard E. Faith
Piecewise Execution of Nested Data-Parallel Programs. LCPC (1995)
Allen Goldberg, Peter Mills, Lars S. Nyland, Jan F. Prins, John H. Reif, James Riely
Specification and Development of Parallel Algorithms with the Proteus System. Specification of Parallel Algorithms (1994)
Steve Goddard, Subodh Kumar, Jan F. Prins
Connected components algorithms for mesh-connected parallel computers. Parallel Algorithms (1994)
Jan F. Prins, Daniel W. Palmer
Transforming High-Level Data-Parallel Programs into Vector Operations. PPOPP (1993)
William L. Hightower, Jan F. Prins, John H. Reif
Implementations of Randomized Sorting on Large Parallel Machines. SPAA (1992)
Peter Mills, Lars S. Nyland, Jan F. Prins, John H. Reif
Prototyping N-Body Simulation in Proteus. IPPS (1992)
Peter Mills, Lars S. Nyland, Jan F. Prins, John H. Reif, Robert A. Wagner
Prototyping parallel and distributed programs in Proteus. SPDP (1991)
Susan Horwitz, Jan F. Prins, Thomas W. Reps
Integrating Noninterfering Versions of Programs. ACM Trans. Program. Lang. Syst. 11 (3) (1989)
Susan Horwitz, Jan F. Prins, Thomas W. Reps
Integrating Non-Interfering Versions of Programs. POPL (1988)
Susan Horwitz, Jan F. Prins, Thomas W. Reps
On the Adequacy of Program Dependence Graphs for Representing Programs. POPL (1988)
Thomas W. Reps, Susan Horwitz, Jan F. Prins
Support for Integrating Program Variants in an Environment for Programming in the Large. SCM (1988)
David Gries, Jan F. Prins
McLaren's Masterpiece. Sci. Comput. Program. 8 (2) (1987)
David Gries, Jan F. Prins
A new notion of encapsulation. ACM SIGPLAN Notices 20 (7) (1985)
Dean Jacobs, Jan F. Prins, Peter Siegel, Kenneth Wilson
Monte Carlo techniques in code optimization. MICRO (1982)
Jan F. Prins
Automated testing in APL - an application of exception handling. APL (1982)