Deepak Bandyopadhyay

Publication Activity (10 Years)

Years Active: 2001-2019
Publications (10 Years): 1

Top Topics

Uci Machine Learning Repository

Making Decisions

Interactive Visualization

Top Venues

J. Chem. Inf. Model.

Publications

Deepak Bandyopadhyay, Constantine Kreatsoulas, Pat G. Brady, Joseph Boyer, Zangdong He, Genaro Scavello, Tyler Peryea, Ajit Jadhav, Dac-Trung Nguyen, Rajarshi Guha
Scaffold-Based Analytics: Enabling Hit-to-Lead Decisions by Visualizing Chemical Series Linked across Large Datasets. J. Chem. Inf. Model. 59 (11) (2019)
Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha
Functional neighbors: inferring relationships between nonhomologous protein families using family-specific packing motifs. IEEE Trans. Inf. Technol. Biomed. 14 (5) (2010)
Deepak Bandyopadhyay, Jun Huan, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha
Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications. J. Comput. Aided Mol. Des. 23 (11) (2009)
Deepak Bandyopadhyay, Jun Huan, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha
Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development. J. Comput. Aided Mol. Des. 23 (11) (2009)
Deepak Bandyopadhyay, Dimitris K. Agrafiotis
A self-organizing algorithm for molecular alignment and pharmacophore development. J. Comput. Chem. 29 (6) (2008)
Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha
Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs. BIBM (2008)
Dimitris K. Agrafiotis, Deepak Bandyopadhyay, Michael Farnum
Radial Clustergrams: Visualizing the Aggregate Properties of Hierarchical Clusters. J. Chem. Inf. Model. 47 (1) (2007)
Deepak Bandyopadhyay, Jack Snoeyink
Almost-Delaunay simplices: Robust neighbor relations for imprecise 3D points using CGAL. Comput. Geom. 38 (1-2) (2007)
Jun Huan, Deepak Bandyopadhyay, Wei Wang, Jack Snoeyink, Jan F. Prins, Alexander Tropsha
Comparing Graph Representations of Protein Structure for Mining Family-Specific Residue-Based Packing Motifs. J. Comput. Biol. 12 (6) (2005)
Deepak Bandyopadhyay, Jack Snoeyink
Almost-Delaunay simplices: nearest neighbor relations for imprecise points. SODA (2004)
Jun Huan, Wei Wang, Deepak Bandyopadhyay, Jack Snoeyink, Jan F. Prins, Alexander Tropsha
Mining protein family specific residue packing patterns from protein structure graphs. RECOMB (2004)
Ramesh Raskar, Greg Welch, Kok-Lim Low, Deepak Bandyopadhyay
Shader Lamps: Animating Real Objects With Image-Based Illumination. Rendering Techniques (2001)
Deepak Bandyopadhyay, Ramesh Raskar, Henry Fuchs
Dynamic Shader Lamps: Painting on Movable Objects. ISAR (2001)