Mary Qu Yang

Publication Activity (10 Years)

Years Active: 2003-2021
Publications (10 Years): 26

Top Topics

Transcriptional Regulatory

Protein Interaction

Systems Biology

Top Venues

BMC Syst. Biol.

J. Supercomput.

Publications

Wenjuan Zhang, William Yang, John Talburt, Sherman Morton Weissman, Mary Qu Yang
Missing Value Recovery for Single Cell RNA Sequencing Data. CSCI (2021)
Pengfei Cao, Zhongyi Yang, Liang Sun, Yanchun Liang, Mary Qu Yang, Renchu Guan
Image Captioning with Bidirectional Semantic Attention-Based Guiding of Long Short-Term Memory. Neural Process. Lett. 50 (1) (2019)
Mary Qu Yang, Sherman Morton Weissman, William Yang, Jialing Zhang, Allon Canaan, Renchu Guan
Correction to: MISC: missing imputation for single-cell RNA sequencing data. BMC Syst. Biol. 13 (1) (2019)
Yifan Zhang, William Yang, Jun S. Liu, Mary Qu Yang
Characterizing Mutually Exclusive Driver Mutations in Pan-Cancer. BIBM (2019)
Renchu Guan, Xu Wang, Maurizio Marchese, Mary Qu Yang, Yanchun Liang, Chen Yang
Feature space learning model. J. Ambient Intell. Humaniz. Comput. 10 (5) (2019)
Dan Li, Mary Qu Yang
Correction to: Identification and characterization of conserved lncRNAs in human and rat brain. BMC Bioinform. 19 (1) (2018)
Mary Qu Yang, Sherman Morton Weissman, William Yang, Jialing Zhang, Allon Canaan, Renchu Guan
MISC: missing imputation for single-cell RNA sequencing data. BMC Syst. Biol. 12 (7) (2018)
Dan Li, William Yang, Carolyn Arthur, Jun S. Liu, Carolina Cruz-Niera, Mary Qu Yang
Systems biology analysis reveals new insights into invasive lung cancer. BMC Syst. Biol. 12 (7) (2018)
Xixun Lin, Yanchun Liang, Limin Wang, Xu Wang, Mary Qu Yang, Renchu Guan
A Knowledge Base Completion Model Based on Path Feature Learning. Int. J. Comput. Commun. Control 13 (1) (2018)
Steven B. Cogill, Anand K. Srivastava, Mary Qu Yang, Liangjiang Wang
Co-expression of long non-coding RNAs and autism risk genes in the developing human brain. BMC Syst. Biol. 12 (7) (2018)
Wenbing Zhao, Mary Qu Yang
Correction to: Dependability enhancing mechanisms for integrated clinical environments. J. Supercomput. 74 (7) (2018)
Guannan He, Yanchun Liang, Yan Chen, William Yang, Jun S. Liu, Mary Qu Yang, Renchu Guan
A hotspots analysis-relation discovery representation model for revealing diabetes mellitus and obesity. BMC Syst. Biol. 12 (7) (2018)
Ling Hu, Rong Zhang, Qiong Yuan, Yinping Gao, Mary Qu Yang, Chunxiang Zhang, Jiankun Huang, Yufei Sun, William Yang, Jack Y. Yang, Zhen-li Min, Jing Cheng, Youping Deng, Xiamin Hu
The emerging role of microRNA-4487/6845-3p in Alzheimer's disease pathologies is induced by Aβ25-35 triggered in SH-SY5Y cell. BMC Syst. Biol. 12 (7) (2018)
Mengjie Guo, Sicheng Lu, Hongming Huang, Yaohui Wang, Mary Qu Yang, Ye Yang, Zhimin Fan, Bin Jiang, Youping Deng
Increased AURKA promotes cell proliferation and predicts poor prognosis in bladder cancer. BMC Syst. Biol. 12 (7) (2018)
Dan Li, Mary Qu Yang
Identification and characterization of conserved lncRNAs in human and rat brain. BMC Bioinform. 18 (14) (2017)
Dan Li, William Yang, Yifan Zhang, Jack Y. Yang, Weida Tong, Renchu Guan, Mary Qu Yang
Comprehensive analysis of pulmonary adenocarcinoma in situ (AIS) revealed new insights into lung cancer progression. BIBM (2017)
Guannan He, Yanchun Liang, Yan Chen, William Yang, Jun S. Liu, Mary Qu Yang, Renchu Guan
Relation discovery and hotspots analysis on diabetes mellitus and obesity with representation model. BIBM (2017)
William Yang, Sherman Morton Weissman, Renchu Guan, Jialing Zhang, Allon Canaan, Mary Qu Yang
Invited talk: Developing deep multi-source intelligent learning that facilitates the advancement of single cell genomics research. BIBM (2017)
Wenbing Zhao, Mary Qu Yang
Dependability enhancing mechanisms for integrated clinical environments. J. Supercomput. 73 (10) (2017)
Yifan Zhang, William Yang, Dan Li, Jack Y. Yang, Renchu Guan, Weida Tong, Mary Qu Yang
Toward precision breast cancer survival prediction utilizing combined whole genome-wide expression and somatic mutation analysis. BIBM (2017)
Hao Zhang, Mary Qu Yang, Xiaoyue Feng, William Yang, Weida Tong, Renchu Guan
Protein-Protein Interaction Extraction Using Attention-Based Convolution Neural Networks. BCB (2017)
Haiqing Li, Guo-Zheng Li, William Yang, Ying Chen, Xiaoxin Zhu, Mary Qu Yang
Prediction of the efficacy of Wuji Pills by machine learning methods. BIBM (2016)
Jiamin Yuan, Jiachang Chen, Li Huang, Fuping Xu, Mary Qu Yang, Shixing Yan, Guo-Zheng Li, Zhimin Yang
Visualized analysis of incomplete TCM meridian conductance data. BIBM (2016)
Li Huang, Shixing Yan, Jiamin Yuan, Zhiya Zuo, Fuping Xu, Yanzhao Lin, Mary Qu Yang, Zhimin Yang, Guo-Zheng Li
Comparing of feature selection and classification methods on report-based subhealth data. BIBM (2016)
Chong He, Changbo Zhao, Guo-Zheng Li, Wei Zhu, William Yang, Mary Qu Yang
A hybrid iterative approach for microarray missing value estimation. BIBM (2016)
Hong Zhou, Joseph Manthey, Ekaterina Lioutikova, Mary Qu Yang, William Yang, Kenji Yoshigoe, Hong Wang
The upregulation of Myb and Peg3 may mediate EGCG inhibition effect on mouse lung adenocarcinoma. BIBM (2015)
William Yang, Kenji Yoshigoe, Xiang Qin, Jun S. Liu, Jack Y. Yang, Andrzej Niemierko, Youping Deng, Yunlong Liu, A. Keith Dunker, Zhongxue Chen, Liangjiang Wang, Dong Xu, Hamid R. Arabnia, Weida Tong, Mary Qu Yang
Identification of genes and pathways involved in kidney renal clear cell carcinoma. BMC Bioinform. 15 (S-17) (2014)
Jack Y. Yang, A. Keith Dunker, Jun S. Liu, Xiang Qin, Hamid R. Arabnia, William Yang, Andrzej Niemierko, Zhongxue Chen, Zuojie Luo, Liangjiang Wang, Yunlong Liu, Dong Xu, Youping Deng, Weida Tong, Mary Qu Yang
Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. BMC Bioinform. 15 (S-17) (2014)
Mary Qu Yang, Laura Elnitski
Orthology-driven mapping of bidirectional promoters in human and mouse genomes. BMC Bioinform. 15 (S-17) (2014)
Chang Liu, Lili Lu, Quan Kong, Yan Li, Haihua Wu, William Yang, Shandan Xu, Xinyu Yang, Xiaolei Song, Jack Y. Yang, Mary Qu Yang, Youping Deng
Developing discriminate model and comparative analysis of differentially expressed genes and pathways for bloodstream samples of diabetes mellitus type 2. BMC Bioinform. 15 (S-17) (2014)
Xiaolong Zhang, Ting Wang, Huiping Luo, Jack Y. Yang, Youping Deng, Jinshan Tang, Mary Qu Yang
3D Protein structure prediction with genetic tabu search algorithm. BMC Syst. Biol. 4 (S-1) (2010)
Liangjiang Wang, Caiyan Huang, Mary Qu Yang, Jack Y. Yang
BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features. BMC Syst. Biol. 4 (S-1) (2010)
Guo-Zheng Li, Mingyu You, Lei Ge, Jack Y. Yang, Mary Qu Yang
Feature selection for semi-supervised multi-label learning with application to gene function analysis. BCB (2010)
Mary Qu Yang, Jack Y. Yang
Lecture notes: 2010 and beyond, the decade of high-performance computing for the next-generation sequence analysis. Int. J. Comput. Biol. Drug Des. 2 (2) (2009)
Mingyu You, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang
An Enhanced Lipschitz Embedding Classifier for Multi-Emotion Speech Analysis. Int. J. Pattern Recognit. Artif. Intell. 23 (8) (2009)
Ying Chen, Nazeih M. Botros, Mary Qu Yang
Editorial review: engineering modelling and intelligent computing are synergistic in translational medicine research. Int. J. Funct. Informatics Pers. Medicine 2 (4) (2009)
Kaiqi Xiong, Sang C. Suh, Mary Qu Yang, Jack Y. Yang, Hamid R. Arabnia
Next Generation Sequence Analysis Using Genetic Algorithms on Multi-core Technology. IJCBS (2009)
Su-Fen Chen, Xue-Qiang Zeng, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang
Redundant Gene Selection Based on Particle Swarm Optimization. IJCBS (2009)
Xue-Qiang Zeng, Guo-Zheng Li, Gengfeng Wu, Jack Y. Yang, Mary Qu Yang
Irrelevant gene elimination for Partial Least Squares based Dimension Reduction by using feature probes. Int. J. Data Min. Bioinform. 3 (1) (2009)
Mary Qu Yang, Sang C. Suh, Kaiqi Xiong, Jack Y. Yang, Hamid R. Arabnia
The Impact of Supercomputing in the Next Generation Sequencing Data Mining. PDPTA (2009)
Mary Qu Yang, Andrzej Niemierko, Jack Y. Yang, Yufang Jin
Promoting inter/multidisciplinary education and research in bioinformatics, systems biology and intelligent computing. Int. J. Comput. Biol. Drug Des. 2 (3) (2009)
Guo-Zheng Li, Hao-Hua Meng, Mary Qu Yang, Jack Y. Yang
Combining support vector regression with feature selection for multivariate calibration. Neural Comput. Appl. 18 (7) (2009)
Xue-Qiang Zeng, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang, Gengfeng Wu
Dimension reduction with redundant gene elimination for tumor classification. BMC Bioinform. 9 (S-6) (2008)
Xue-Qiang Zeng, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang
A Novel Metric for Redundant Gene Elimination Based on Discriminative Contribution. ISBRA (2008)
Guo-Zheng Li, Hao-Hua Meng, Wen-Cong Lu, Jack Y. Yang, Mary Qu Yang
Asymmetric bagging and feature selection for activities prediction of drug molecules. BMC Bioinform. 9 (S-6) (2008)
Yuehui Chen, Feng Chen, Jack Y. Yang, Mary Qu Yang
Ensemble Voting System for Multiclass protein fold Recognition. Int. J. Pattern Recognit. Artif. Intell. 22 (4) (2008)
Yuhai Liu, Guo-Zheng Li, Wenqian Yu, Jianqun Xu, Jack Y. Yang, Mary Qu Yang
Abnormal Traffic Detection in VoIP by Using Machine Learning Approaches. IC-AI (2008)
Walker H. Land Jr., John J. Heine, Thomas Raway, Alda Mizaku, Nataliya Kovalchuk, Jack Y. Yang, Mary Qu Yang
New statistical learning theory paradigms adapted to breast cancer diagnosis/classification using image and non-image clinical data. Int. J. Funct. Informatics Pers. Medicine 1 (2) (2008)
Tian-Yu Liu, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang
Feature selection for the imbalanced QSAR problems by using EasyEnsemble. Int. J. Comput. Biol. Drug Des. 1 (4) (2008)
Jack Y. Yang, Mary Qu Yang
Transforming medicine: functional informatics, drug design, and personalised healthcare. Int. J. Funct. Informatics Pers. Medicine 1 (1) (2008)
Yuhai Liu, Guo-Zheng Li, Hong-Yu Zhang, Mary Qu Yang, Jack Y. Yang
Feature selection for gene function prediction using multi-labelled lazy learning. Int. J. Funct. Informatics Pers. Medicine 1 (3) (2008)
Jack Y. Yang, Mary Qu Yang
Identification of Intrinsically Unstructured Proteins using hierarchical classifier. Int. J. Data Min. Bioinform. 2 (2) (2008)
Guo-Zheng Li, Jack Y. Yang, Wen-Cong Lu, Dan Li, Mary Qu Yang
Improving prediction accuracy of drug activities by utilising unlabelled instances with feature selection. Int. J. Comput. Biol. Drug Des. 1 (1) (2008)
Mary Qu Yang, James Taylor, Laura Elnitski
Comparative analyses of bidirectional promoters in vertebrates. BMC Bioinform. 9 (S-6) (2008)
Pan Du, Simon M. Lin, Mary Qu Yang, Jack Y. Yang
2009 and beyond: the decade of personalised medicine. Int. J. Comput. Biol. Drug Des. 1 (4) (2008)
Frank Emmert-Streib, Hamid R. Arabnia, Mary Qu Yang
Preface. Appl. Artif. Intell. 22 (7&8) (2008)
Mingyu You, Guo-Zheng Li, Xue-Qiang Zeng, Lei Ge, Lijuan Bi, Suying Huang, Mary Qu Yang, Jack Y. Yang
A Personalized Traditional Chinese Medicine System in the case of Cai's gynecology. Int. J. Funct. Informatics Pers. Medicine 1 (4) (2008)
Jens Lichtenberg, Edwin Jacox, Mary Qu Yang, Laura Elnitski, Lonnie R. Welch
Word-Based Characterization of the Bidirectional Promoters from the Human DNA-Repair Pathway. BIOCOMP (2008)
Jack Y. Yang, Mary Qu Yang, Hamid R. Arabnia
High Performance Computing and Computational Intelligence: Link to the Translational Medicine and Personalized Healthcare - Banquet Keynote Lecture. PDPTA (2008)
Nazeih M. Botros, Ying Chen, Mary Qu Yang
Functional informatics and personalised medicine are key synergistic components of translational medicine. Int. J. Funct. Informatics Pers. Medicine 1 (4) (2008)
Mary Qu Yang, James Taylor, Laura Elnitski
Rigorous Mapping of Orthologous Bidirectional Promoters in Vertebrates Defines their Evolutionary History. IMSCCS (2007)
Mary Qu Yang, Laura Elnitski
An Overview of Bidirectional Promoters. BIBE (2007)
Guo-Zheng Li, Hao-Hua Meng, Mary Qu Yang, Jack Y. Yang
Support Vector Regression with Feature Selection for the Multivariate Calibration of Spectrofluorimetric Determination of Aromatic Amino Acids. BIBE (2007)
Jack Y. Yang, Andrzej Niemierko, Mary Qu Yang, Zuojie Luo, Jianling Li
Predicting Tumor Malignancies using Combined Computational Intelligence, Bioinformatics and Laboratory Molecular Biology Approaches. CIBCB (2007)
Jack Y. Yang, Andrzej Niemierko, Mary Qu Yang, Youping Deng
Non-Monotonic Radio-Sensitivity over Tumor Volumes on Adjuvant Radio Therapy A New Insight on Cell Killing and Modeling. BIBE (2007)
Hua-Long Bu, Guo-Zheng Li, Xue-Qiang Zeng, Jack Y. Yang, Mary Qu Yang
Feature Selection and Partial Least Squares Based Dimension Reduction for Tumor Classification. BIBE (2007)
Mary Qu Yang, Laura Elnitski
Orthology and Multiple Class Prediction of Functional Elements in the Human Genome. BIOCOMP (2007)
Mary Qu Yang, Laura Elnitski
Promoter studies in the human genome: one perspective on an unfinished story. BIBE (2007)
Guo-Zheng Li, Hao-Hua Meng, Mary Qu Yang, Jack Y. Yang
Asymmetric Bagging and Feature Selection for Activities Prediction of Drug Molecules. IMSCCS (2007)
Yuehui Chen, Xueqin Zhang, Mary Qu Yang, Jack Y. Yang
Ensemble of Probabilistic Neural Networks for Protein Fold Recognition. BIBE (2007)
Guo-Zheng Li, Xue-Qiang Zeng, Jack Y. Yang, Mary Qu Yang
Partial Least Squares Based Dimension Reduction with Gene Selection for Tumor Classification. BIBE (2007)
Guo-Zheng Li, Dan Li, Wen-Cong Lu, Jack Y. Yang, Mary Qu Yang
Feature Selection for Co-Training: A QSAR Study. IC-AI (2007)
Jack Y. Yang, Guo-Zheng Li, Li-Xin Liu, Mary Qu Yang
Classification of Brain Glioma by Using Neural Networks Ensemble with Multi-Task Learning. BIOCOMP (2007)
Mary Qu Yang, Jack Y. Yang
An Investigation into the Feasibility of Detecting Microscopic Disease Using Machine Learning. BIBE (2007)
Jack Y. Yang, Mary Qu Yang
The 2007 World Congress in Computer Science, Computer Engineering, and Applied Computing Invited Banquet Keynote Lecture: Using Bioinformatics and Machine Learning to Predict Potential Malignancies. BIOCOMP (2007)
Mary Qu Yang, Laura M. Koehly, Laura Elnitski
Comprehensive Annotation of Bidirectional Promoters Identifies Co-Regulation among Breast and Ovarian Cancer Genes. PLoS Comput. Biol. 3 (4) (2007)
Mary Qu Yang, Jack Y. Yang, Okan K. Ersoy
Classification of proteins multiple-labelled and single-labelled with protein functional classes. Int. J. Gen. Syst. 36 (1) (2007)
Mary Qu Yang, Laura Elnitski
Invited Talk: A Computational Study of Bidirectional Promoters in the Human Genome. ISBRA (2007)
Mehdi Pirooznia, Arun Rawat, Jack Y. Yang, Mary Qu Yang, Ping Gong, Edward J. Perkins, Youping Deng
An Effective Interwoven Loop Design Application for Two-Channel Microarray Experiments. BIBE (2007)
Jack Y. Yang, Mary Qu Yang
Learning from Sequences with Determining Correlation between Transmembrane and Protein Disorder. BIOCOMP (2006)
Jack Y. Yang, Mary Qu Yang
Assessing protein function using a combination of supervised and unsupervised learning. BIBE (2006)
Mary Qu Yang, Jack Y. Yang
IUP: Intrinsically Unstructured Protein predictor - A software tool for analyzing polypeptide sequences. BIBE (2006)
Mary Qu Yang, Jack Y. Yang
Identification of Intrinsically Unstructured Regions in Proteins Using Primary Structure. BIOCOMP (2006)
Jack Y. Yang, Mary Qu Yang, Okan K. Ersoy
Exploring Protein Functional Relationships Using Genomic Information and Data Mining Techniques. ICANN (2003)