Ping Gong

Publication Activity (10 Years)

Years Active: 2006-2022
Publications (10 Years): 8

Top Topics

Gene Expression

Caenorhabditis Elegans

Preliminary Analysis

Top Venues

BMC Syst. Biol.

J. Cheminformatics

EURASIP J. Bioinform. Syst. Biol.

Publications

Meng Song, Jonathan Greenbaum, Joseph Luttrell IV, Weihua Zhou, Chong Wu, Zhe Luo, Chuan Qiu, Lan-Juan Zhao, Kuan-Jui Su, Qing Tian, Hui Shen, Huixiao Hong, Ping Gong, Xinghua Shi, Hong-Wen Deng, Chaoyang Zhang
An autoencoder-based deep learning method for genotype imputation. Frontiers Artif. Intell. 5 (2022)
Gabriel Idakwo, Sundar Thangapandian, Joseph Luttrell IV, Yan Li, Nan Wang, Zhaoxian Zhou, Huixiao Hong, Bei Yang, Chaoyang Zhang, Ping Gong
Structure-activity relationship-based chemical classification of highly imbalanced Tox21 datasets. J. Cheminformatics 12 (1) (2020)
Bohu Pan, Rebecca Kusko, Wenming Xiao, Yuanting Zheng, Zhichao Liu, Chunlin Xiao, Sugunadevi Sakkiah, Wenjing Guo, Ping Gong, Chaoyang Zhang, Weigong Ge, Leming Shi, Weida Tong, Huixiao Hong
Similarities and differences between variants called with human reference genome HG19 or HG38. BMC Bioinform. (2) (2019)
Bohu Pan, Rebecca Kusko, Wenming Xiao, Yuanting Zheng, Zhichao Liu, Chunlin Xiao, Sugunadevi Sakkiah, Wenjing Guo, Ping Gong, Chaoyang Zhang, Weigong Ge, Leming Shi, Weida Tong, Huixiao Hong
Correction to: Similarities and differences between variants called with human reference genome HG19 or HG38. BMC Bioinform. 20 (1) (2019)
Ping Gong, Keri B. Donohue, Anne M. Mayo, Yuping Wang, Huixiao Hong, Mitchell S. Wilbanks, Natalie D. Barker, Xin Guan, Kurt A. Gust
Comparative toxicogenomics of three insensitive munitions constituents 2, 4-dinitroanisole, nitroguanidine and nitrotriazolone in the soil nematode Caenorhabditis elegans. BMC Syst. Biol. 12 (7) (2018)
Bei Yang, Yaohui Xu, Andrew S. Maxwell, Wonryull Koh, Ping Gong, Chaoyang Zhang
MICRAT: a novel algorithm for inferring gene regulatory networks using time series gene expression data. BMC Syst. Biol. 12 (7) (2018)
Andrew S. Maxwell, Runzhi Li, Bei Yang, Heng Weng, Aihua Ou, Huixiao Hong, Zhaoxian Zhou, Ping Gong, Chaoyang Zhang
Deep learning architectures for multi-label classification of intelligent health risk prediction. BMC Bioinform. 18 (14) (2017)
Isaac Akogwu, Nan Wang, Chaoyang Zhang, Hwanseok Choi, Huixiao Hong, Ping Gong
Factorial analysis of error correction performance using simulated next-generation sequencing data. BIBM (2016)
Peng Li, Ping Gong, Haoni Li, Edward J. Perkins, Nan Wang, Chaoyang Zhang
Gene regulatory network inference and validation using relative change ratio analysis and time-delayed dynamic Bayesian network. EURASIP J. Bioinform. Syst. Biol. 2014 (2014)
Yan Peng, Andrew S. Maxwell, Natalie D. Barker, Jennifer G. Laird, Alan J. Kennedy, Nan Wang, Chaoyang Zhang, Ping Gong
SeqAssist: a novel toolkit for preliminary analysis of next-generation sequencing data. BMC Bioinform. 15 (S-11) (2014)
Yi Yang, Si Li, Andrew S. Maxwell, Natalie D. Barker, Yan Peng, Ying Li, Haoni Li, Xi Wu, Peng Li, Tao Huang, Chenhua Zhang, Nan Wang, Edward J. Perkins, Chaoyang Zhang, Ping Gong
Deciphering chemically-induced reversible neurotoxicity by reconstructing perturbed pathways from time series microarray gene expression data. GENSiPS (2013)
Yi Yang, Andrew S. Maxwell, Xiaowei Zhang, Nan Wang, Edward J. Perkins, Chaoyang Zhang, Ping Gong
Differential reconstructed gene interaction networks for deriving toxicity threshold in chemical risk assessment. BMC Bioinform. 14 (S-14) (2013)
Xiaofei Nan, Nan Wang, Ping Gong, Chaoyang Zhang, Yixin Chen, Dawn Wilkins
Biomarker discovery using 1-norm regularization for multiclass earthworm microarray gene expression data. Neurocomputing 92 (2012)
Ying Li, Ping Gong, Edward J. Perkins, Chaoyang Zhang, Nan Wang
RefNetBuilder: a platform for construction of integrated reference gene regulatory networks from expressed sequence tags. BMC Bioinform. 12 (S-10) (2011)
Xi Wu, Peng Li, Nan Wang, Ping Gong, Edward J. Perkins, Youping Deng, Chaoyang Zhang
State Space Model with hidden variables for reconstruction of gene regulatory networks. BMC Syst. Biol. 5 (S-3) (2011)
Xi Wu, Nan Wang, Chaoyang Zhang, Ping Gong
Reconstruction of gene regulatory networks using state space model. BIBM Workshops (2011)
Ping Gong, Fuliang Xie, Baohong Zhang, Edward J. Perkins
In silico identification of conserved microRNAs and their target transcripts from expressed sequence tags of three earthworm species. Comput. Biol. Chem. 34 (5-6) (2010)
Xiaofei Nan, Nan Wang, Ping Gong, Chaoyang Zhang, Yixin Chen, Dawn Wilkins
Gene selection using 1-norm regularization for multi-class microarray data. BIBM (2010)
Haoni Li, Peng Li, Chaoyang Zhang, Nan Wang, Ping Gong, Edward J. Perkins
Performance evaluation of the time-delayed dynamic Bayesian network approach to inferring gene regulatory networks from time series microarray data. BCB (2010)
Vijender Chaitankar, Preetam Ghosh, Chaoyang Zhang, Ping Gong, Edward J. Perkins
Effects of cDNA microarray time-series data size on gene regulatory network inference accuracy. BCB (2010)
Vijender Chaitankar, Preetam Ghosh, Edward J. Perkins, Ping Gong, Youping Deng, Chaoyang Zhang
A novel gene network inference algorithm using predictive minimum description length approach. BMC Syst. Biol. 4 (S-1) (2010)
Ping Gong, Fuliang Xie, Baohong Zhang, Edward J. Perkins
In silico identification of microRNAs from expressed sequence tags of three earthworm species. BCB (2010)
Vijender Chaitankar, Preetam Ghosh, Edward J. Perkins, Ping Gong, Chaoyang Zhang
Time lagged information theoretic approaches to the reverse engineering of gene regulatory networks. BMC Bioinform. 11 (S-6) (2010)
Ying Li, Nan Wang, Edward J. Perkins, Ping Gong
Discovery of Biomarker Genes from Earthworm Microarray Data by Discriminant Analysis and Clustering. IJCBS (2009)
Alexander Pozhikov, Mehdi Pirooznia, Rachel Ryan, Chaoyang Zhang, Ping Gong, Edward J. Perkins, Youping Deng, Marius Brouwer
Generation and Analysis of Expressed Sequence Tags from the Sheepshead Minnow (Cyprinodon Variegatus). BIOCOMP (2009)
Vijender Chaitankar, Chaoyang Zhang, Preetam Ghosh, Edward J. Perkins, Ping Gong, Youping Deng
Gene Regulatory Network Inference Using Predictive Minimum Description Length Principle and Conditional Mutual Information. IJCBS (2009)
Peng Li, Chaoyang Zhang, Edward J. Perkins, Ping Gong, Youping Deng
Inferring Gene Regulatory Network of Yeast Cell-Cycle using Dynamic Bayesian Network. BIOCOMP (2008)
Ping Gong, Mehdi Pirooznia, Xin Guan, J. Cristobal Vera, Chun Liang, Youping Deng, Chaoyang Zhang, Edward J. Perkins
A Strategy for High Throughput Microarray Oligo Probe Design Using 454 and Sanger Sequencing Data of Eisenia fetida Expressed Sequence Tags. BIOCOMP (2008)
Mehdi Pirooznia, Ping Gong, Chaoyang Zhang, Edward J. Perkins, Youping Deng
Creating a Workflow for Expressed Sequence Tags Analysis. BIOCOMP (2008)
Mehdi Pirooznia, Ping Gong, Xin Guan, Laura S. Inouye, Kuan Yang, Edward J. Perkins, Youping Deng
. BMC Bioinform. 8 (S-7) (2007)
Peng Li, Chaoyang Zhang, Edward J. Perkins, Ping Gong, Youping Deng
Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks. BMC Bioinform. 8 (S-7) (2007)
Mehdi Pirooznia, Arun Rawat, Jack Y. Yang, Mary Qu Yang, Ping Gong, Edward J. Perkins, Youping Deng
An Effective Interwoven Loop Design Application for Two-Channel Microarray Experiments. BIBE (2007)
Edward J. Perkins, Wenjun Bao, Xin Guan, Choo-Yaw Ang, Russell D. Wolfinger, Tzu-Ming Chu, Ping Gong, Sharon A. Meyer, Laura S. Inouye
Comparison of Gene Expression Effects in Liver Tissue and Primary Hepatocyte Cell Cultures After Exposure to Hexahydro-1, 3, 5Trinitro-1, 3, 5-Triazine. IMSCCS (1) (2006)