Jack Y. Yang

Publication Activity (10 Years)

Years Active: 2003-2018
Publications (10 Years): 4

Top Topics

Survival Prediction

Transcriptional Regulatory

Top Venues

BMC Syst. Biol.

Publications

Ling Hu, Rong Zhang, Qiong Yuan, Yinping Gao, Mary Qu Yang, Chunxiang Zhang, Jiankun Huang, Yufei Sun, William Yang, Jack Y. Yang, Zhen-li Min, Jing Cheng, Youping Deng, Xiamin Hu
The emerging role of microRNA-4487/6845-3p in Alzheimer's disease pathologies is induced by Aβ25-35 triggered in SH-SY5Y cell. BMC Syst. Biol. 12 (7) (2018)
Dan Li, William Yang, Yifan Zhang, Jack Y. Yang, Weida Tong, Renchu Guan, Mary Qu Yang
Comprehensive analysis of pulmonary adenocarcinoma in situ (AIS) revealed new insights into lung cancer progression. BIBM (2017)
Yifan Zhang, William Yang, Dan Li, Jack Y. Yang, Renchu Guan, Weida Tong, Mary Qu Yang
Toward precision breast cancer survival prediction utilizing combined whole genome-wide expression and somatic mutation analysis. BIBM (2017)
Wenbing Zhao, Mamdouh Babi, William Yang, Xiong Luo, Yueqin Zhu, Jack Y. Yang, Chaomin Luo, Mary Yang
Byzantine fault tolerance for collaborative editing with commutative operations. EIT (2016)
William Yang, Kenji Yoshigoe, Xiang Qin, Jun S. Liu, Jack Y. Yang, Andrzej Niemierko, Youping Deng, Yunlong Liu, A. Keith Dunker, Zhongxue Chen, Liangjiang Wang, Dong Xu, Hamid R. Arabnia, Weida Tong, Mary Qu Yang
Identification of genes and pathways involved in kidney renal clear cell carcinoma. BMC Bioinform. 15 (S-17) (2014)
Zhongxue Chen, William Yang, Qingzhong Liu, Jack Y. Yang, Jing Li, Mary Yang
A new statistical approach to combining p-values using gamma distribution and its application to genome-wide association study. BMC Bioinform. 15 (S-17) (2014)
Jack Y. Yang, A. Keith Dunker, Jun S. Liu, Xiang Qin, Hamid R. Arabnia, William Yang, Andrzej Niemierko, Zhongxue Chen, Zuojie Luo, Liangjiang Wang, Yunlong Liu, Dong Xu, Youping Deng, Weida Tong, Mary Qu Yang
Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. BMC Bioinform. 15 (S-17) (2014)
Chang Liu, Lili Lu, Quan Kong, Yan Li, Haihua Wu, William Yang, Shandan Xu, Xinyu Yang, Xiaolei Song, Jack Y. Yang, Mary Qu Yang, Youping Deng
Developing discriminate model and comparative analysis of differentially expressed genes and pathways for bloodstream samples of diabetes mellitus type 2. BMC Bioinform. 15 (S-17) (2014)
Walker H. Land Jr., Xingye Qiao, Daniel Margolis, William S. Ford, Christopher T. Paquette, Joseph F. Perez-Rogers, Jeffrey A. Borgia, Jack Y. Yang, Youping Deng
Kernelized partial least squares for feature reduction and classification of gene microarray data. BMC Syst. Biol. 5 (S-3) (2011)
Zhongxue Chen, Jianzhong Liu, Hon Ng, Saralees Nadarajah, Howard L. Kaufman, Jack Y. Yang, Youping Deng
Statistical methods on detecting differentially expressed genes for RNA-seq data. BMC Syst. Biol. 5 (S-3) (2011)
Ke Zhang, Yunlong Liu, Jack Y. Yang, Hamid R. Arabnia, Andrzej Niemierko, Arif Ghafoor, Weizhong Li, Youping Deng
From genes to networks: in systematic points of view. BMC Syst. Biol. 5 (S-3) (2011)
Tomás Novosád, Václav Snásel, Ajith Abraham, Jack Y. Yang
Searching Protein 3-D Structures for Optimal Structure Alignment Using Intelligent Algorithms and Data Structures. IEEE Trans. Inf. Technol. Biomed. 14 (6) (2010)
Xiaolong Zhang, Ting Wang, Huiping Luo, Jack Y. Yang, Youping Deng, Jinshan Tang, Mary Qu Yang
3D Protein structure prediction with genetic tabu search algorithm. BMC Syst. Biol. 4 (S-1) (2010)
Liangjiang Wang, Caiyan Huang, Mary Qu Yang, Jack Y. Yang
BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features. BMC Syst. Biol. 4 (S-1) (2010)
Guo-Zheng Li, Mingyu You, Lei Ge, Jack Y. Yang, Mary Qu Yang
Feature selection for semi-supervised multi-label learning with application to gene function analysis. BCB (2010)
Zhongxue Chen, Monnie McGee, Qingzhong Liu, Y. Megan Kong, Xudong Huang, Jack Y. Yang, Richard H. Scheuermann
Identifying Differentially Expressed Genes based on probe level data for GeneChip arrays. Int. J. Comput. Biol. Drug Des. 3 (3) (2010)
Walker H. Land Jr., Dan Margolis, Ronald Gottlieb, Jack Y. Yang, Elizabeth A. Krupinski
Improving CT prediction of treatment response in patients with metastatic colorectal carcinoma using statistical learning. Int. J. Comput. Biol. Drug Des. 3 (1) (2010)
Yunji Wang, Hai-Chao Han, Jack Y. Yang, Merry Lindsey, Yufang Jin
A conceptual cellular interaction model of left ventricular remodelling post-MI: dynamic network with exit-entry competition strategy. BMC Syst. Biol. 4 (S-1) (2010)
Mary Qu Yang, Jack Y. Yang
Lecture notes: 2010 and beyond, the decade of high-performance computing for the next-generation sequence analysis. Int. J. Comput. Biol. Drug Des. 2 (2) (2009)
Mingyu You, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang
An Enhanced Lipschitz Embedding Classifier for Multi-Emotion Speech Analysis. Int. J. Pattern Recognit. Artif. Intell. 23 (8) (2009)
Tomás Novosád, Václav Snásel, Ajith Abraham, Jack Y. Yang
Prosima: Protein Similarity Algorithm. NaBIC (2009)
Kaiqi Xiong, Sang C. Suh, Mary Qu Yang, Jack Y. Yang, Hamid R. Arabnia
Next Generation Sequence Analysis Using Genetic Algorithms on Multi-core Technology. IJCBS (2009)
Su-Fen Chen, Xue-Qiang Zeng, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang
Redundant Gene Selection Based on Particle Swarm Optimization. IJCBS (2009)
Xue-Qiang Zeng, Guo-Zheng Li, Gengfeng Wu, Jack Y. Yang, Mary Qu Yang
Irrelevant gene elimination for Partial Least Squares based Dimension Reduction by using feature probes. Int. J. Data Min. Bioinform. 3 (1) (2009)
Mary Qu Yang, Sang C. Suh, Kaiqi Xiong, Jack Y. Yang, Hamid R. Arabnia
The Impact of Supercomputing in the Next Generation Sequencing Data Mining. PDPTA (2009)
Tomás Novosád, Václav Snásel, Ajith Abraham, Jack Y. Yang
YAPS: Yet Another Protein Similarity. SoCPaR (2009)
Mary Qu Yang, Andrzej Niemierko, Jack Y. Yang, Yufang Jin
Promoting inter/multidisciplinary education and research in bioinformatics, systems biology and intelligent computing. Int. J. Comput. Biol. Drug Des. 2 (3) (2009)
Guo-Zheng Li, Hao-Hua Meng, Mary Qu Yang, Jack Y. Yang
Combining support vector regression with feature selection for multivariate calibration. Neural Comput. Appl. 18 (7) (2009)
Xue-Qiang Zeng, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang, Gengfeng Wu
Dimension reduction with redundant gene elimination for tumor classification. BMC Bioinform. 9 (S-6) (2008)
Xue-Qiang Zeng, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang
A Novel Metric for Redundant Gene Elimination Based on Discriminative Contribution. ISBRA (2008)
Guo-Zheng Li, Hao-Hua Meng, Wen-Cong Lu, Jack Y. Yang, Mary Qu Yang
Asymmetric bagging and feature selection for activities prediction of drug molecules. BMC Bioinform. 9 (S-6) (2008)
Yuehui Chen, Feng Chen, Jack Y. Yang, Mary Qu Yang
Ensemble Voting System for Multiclass protein fold Recognition. Int. J. Pattern Recognit. Artif. Intell. 22 (4) (2008)
Yuhai Liu, Guo-Zheng Li, Wenqian Yu, Jianqun Xu, Jack Y. Yang, Mary Qu Yang
Abnormal Traffic Detection in VoIP by Using Machine Learning Approaches. IC-AI (2008)
Walker H. Land Jr., John J. Heine, Thomas Raway, Alda Mizaku, Nataliya Kovalchuk, Jack Y. Yang, Mary Qu Yang
New statistical learning theory paradigms adapted to breast cancer diagnosis/classification using image and non-image clinical data. Int. J. Funct. Informatics Pers. Medicine 1 (2) (2008)
Tian-Yu Liu, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang
Feature selection for the imbalanced QSAR problems by using EasyEnsemble. Int. J. Comput. Biol. Drug Des. 1 (4) (2008)
Jack Y. Yang, Mary Qu Yang
Transforming medicine: functional informatics, drug design, and personalised healthcare. Int. J. Funct. Informatics Pers. Medicine 1 (1) (2008)
Yuhai Liu, Guo-Zheng Li, Hong-Yu Zhang, Mary Qu Yang, Jack Y. Yang
Feature selection for gene function prediction using multi-labelled lazy learning. Int. J. Funct. Informatics Pers. Medicine 1 (3) (2008)
Jack Y. Yang, Mary Qu Yang
Identification of Intrinsically Unstructured Proteins using hierarchical classifier. Int. J. Data Min. Bioinform. 2 (2) (2008)
Guo-Zheng Li, Jack Y. Yang, Wen-Cong Lu, Dan Li, Mary Qu Yang
Improving prediction accuracy of drug activities by utilising unlabelled instances with feature selection. Int. J. Comput. Biol. Drug Des. 1 (1) (2008)
Pan Du, Simon M. Lin, Mary Qu Yang, Jack Y. Yang
2009 and beyond: the decade of personalised medicine. Int. J. Comput. Biol. Drug Des. 1 (4) (2008)
Mingyu You, Guo-Zheng Li, Xue-Qiang Zeng, Lei Ge, Lijuan Bi, Suying Huang, Mary Qu Yang, Jack Y. Yang
A Personalized Traditional Chinese Medicine System in the case of Cai's gynecology. Int. J. Funct. Informatics Pers. Medicine 1 (4) (2008)
Jonathan L. Jesneck, Jack Y. Yang
Promoting synergistic research and education in computational biology and drug design. Int. J. Comput. Biol. Drug Des. 1 (3) (2008)
Jack Y. Yang, Mary Qu Yang, Hamid R. Arabnia
High Performance Computing and Computational Intelligence: Link to the Translational Medicine and Personalized Healthcare - Banquet Keynote Lecture. PDPTA (2008)
Liangjiang Wang, Stephanie Jimenez Irausquin, Jack Y. Yang
Prediction of lipid-interacting amino acid residues from sequence features. Int. J. Comput. Biol. Drug Des. 1 (1) (2008)
Jiazheng Yuan, Mengxia Zhu, M. Javed Iqbal, Jack Y. Yang, David A. Lightfoot
A Computational Approach to Understand Arabidopsis thaliana and Soybean Resistance to Fusarium solani (Fsg). BIBE (2007)
Guo-Zheng Li, Hao-Hua Meng, Mary Qu Yang, Jack Y. Yang
Support Vector Regression with Feature Selection for the Multivariate Calibration of Spectrofluorimetric Determination of Aromatic Amino Acids. BIBE (2007)
Jack Y. Yang, Andrzej Niemierko, Mary Qu Yang, Zuojie Luo, Jianling Li
Predicting Tumor Malignancies using Combined Computational Intelligence, Bioinformatics and Laboratory Molecular Biology Approaches. CIBCB (2007)
Jack Y. Yang, Andrzej Niemierko, Mary Qu Yang, Youping Deng
Non-Monotonic Radio-Sensitivity over Tumor Volumes on Adjuvant Radio Therapy A New Insight on Cell Killing and Modeling. BIBE (2007)
Hua-Long Bu, Guo-Zheng Li, Xue-Qiang Zeng, Jack Y. Yang, Mary Qu Yang
Feature Selection and Partial Least Squares Based Dimension Reduction for Tumor Classification. BIBE (2007)
Guo-Zheng Li, Hao-Hua Meng, Mary Qu Yang, Jack Y. Yang
Asymmetric Bagging and Feature Selection for Activities Prediction of Drug Molecules. IMSCCS (2007)
Yuehui Chen, Xueqin Zhang, Mary Qu Yang, Jack Y. Yang
Ensemble of Probabilistic Neural Networks for Protein Fold Recognition. BIBE (2007)
Lu-Jin You, Guo-Zheng Li, Jack Y. Yang
Support Vector Machines Applied to Research of Ancient Chinese Porcelain: Modeling of Jun Glaze. IC-AI (2007)
Xueqin Zhang, Yuehui Chen, Jack Y. Yang
Stock Index Forecasting Using PSO Based Selective Neural Network Ensemble. IC-AI (2007)
Guo-Zheng Li, Xue-Qiang Zeng, Jack Y. Yang, Mary Qu Yang
Partial Least Squares Based Dimension Reduction with Gene Selection for Tumor Classification. BIBE (2007)
Guo-Zheng Li, Dan Li, Wen-Cong Lu, Jack Y. Yang, Mary Qu Yang
Feature Selection for Co-Training: A QSAR Study. IC-AI (2007)
A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky
Intrinsically Disordered Proteins: Predictions and Applications. BIBE (2007)
Jack Y. Yang, Guo-Zheng Li, Li-Xin Liu, Mary Qu Yang
Classification of Brain Glioma by Using Neural Networks Ensemble with Multi-Task Learning. BIOCOMP (2007)
Mary Qu Yang, Jack Y. Yang
An Investigation into the Feasibility of Detecting Microscopic Disease Using Machine Learning. BIBE (2007)
A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky
Intrinsically Disordered Proteins: An Update. BIBE (2007)
Yuehui Chen, Feng Chen, Jack Y. Yang
Evolving MIMO Flexible Neural Trees for Nonlinear System Identification. IC-AI (2007)
Jack Y. Yang, Mary Qu Yang
The 2007 World Congress in Computer Science, Computer Engineering, and Applied Computing Invited Banquet Keynote Lecture: Using Bioinformatics and Machine Learning to Predict Potential Malignancies. BIOCOMP (2007)
Mary Qu Yang, Jack Y. Yang, Okan K. Ersoy
Classification of proteins multiple-labelled and single-labelled with protein functional classes. Int. J. Gen. Syst. 36 (1) (2007)
Christopher J. Oldfield, Jingwei Meng, Jack Y. Yang, Vladimir N. Uversky, A. Keith Dunker
Intrinsic Disorder in Protein-Protein Interaction Networks: Case Studies of Complexes Involving p53 and 14-3-3. BIOCOMP (2007)
Mehdi Pirooznia, Arun Rawat, Jack Y. Yang, Mary Qu Yang, Ping Gong, Edward J. Perkins, Youping Deng
An Effective Interwoven Loop Design Application for Two-Channel Microarray Experiments. BIBE (2007)
Jack Y. Yang, Mary Qu Yang
Learning from Sequences with Determining Correlation between Transmembrane and Protein Disorder. BIOCOMP (2006)
Jack Y. Yang, Mary Qu Yang
Assessing protein function using a combination of supervised and unsupervised learning. BIBE (2006)
Mary Qu Yang, Jack Y. Yang
IUP: Intrinsically Unstructured Protein predictor - A software tool for analyzing polypeptide sequences. BIBE (2006)
Mary Qu Yang, Jack Y. Yang
Identification of Intrinsically Unstructured Regions in Proteins Using Primary Structure. BIOCOMP (2006)
Jack Y. Yang, Mary Qu Yang, Okan K. Ersoy
Exploring Protein Functional Relationships Using Genomic Information and Data Mining Techniques. ICANN (2003)