Masanori Arita

Publication Activity (10 Years)

Years Active: 1995-2024
Publications (10 Years): 9

Top Topics

Comparative Analysis

Escherichia Coli

Genome Sequences

Top Venues

J. Cheminformatics

Nucleic Acids Res.

Publications

Hunter N. B. Moseley, Philippe Rocca-Serra, Reza M. Salek, Masanori Arita, Emma Schymanski
InChI isotopologue and isotopomer specifications. J. Cheminformatics 16 (1) (2024)
Masanori Arita, Ilene Karsch-Mizrachi, Guy Cochrane
The international nucleotide sequence database collaboration. Nucleic Acids Res. 49 (Database-Issue) (2021)
Jun-ichi Onami, Koji Sakaguchi, Masanori Arita, Kazutsuna Yamaji
Development of the portal site of COVID-19 data in Japan: poster abstract. SenSys (2020)
Mehwish Noureen, Ipputa Tada, Takeshi Kawashima, Masanori Arita
Rearrangement analysis of multiple bacterial genomes. BMC Bioinform. (23) (2019)
Maria Satti, Yasuhiro Tanizawa, Akihito Endo, Masanori Arita
Comparative analysis of probiotic bacteria based on a new definition of core genome. J. Bioinform. Comput. Biol. 16 (3) (2018)
Hiroshi Tsugawa, Kazutaka Ikeda, Wataru Tanaka, Yuya Senoo, Makoto Arita, Masanori Arita
Comprehensive identification of sphingolipid species by in silico retention time and tandem mass spectral library. J. Cheminformatics 9 (1) (2017)
Ipputa Tada, Yasuhiro Tanizawa, Masanori Arita
Visualization of consensus genome structure without using a reference genome. BMC Genom. 18 (S2) (2017)
Masanori Arita, Sebastian Böcker, Steffen Neumann
Computational Metabolomics (NII Shonan Meeting 2017-3). NII Shonan Meet. Rep. 2017 (2017)
Kansuporn Sriyudthsak, Ramon Francisco Pacquiao Mejia, Masanori Arita, Masami Y. Hirai
PASMet: a web-based platform for prediction, modelling and analyses of metabolic systems. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Hiroshi Tsugawa, Mitsuhiro Kanazawa, Atsushi Ogiwara, Masanori Arita
MRMPROBS suite for metabolomics using large-scale MRM assays. Bioinform. 30 (16) (2014)
Henning Redestig, Miyako Kusano, Kaworu Ebana, Makoto Kobayashi, Akira Oikawa, Yozo Okazaki, Fumio Matsuda, Masanori Arita, Naoko Fujita, Kazuki Saito
Exploring molecular backgrounds of quality traits in rice by predictive models based on high-coverage metabolomics. BMC Syst. Biol. 5 (2011)
Atsushi Fukushima, Miyako Kusano, Henning Redestig, Masanori Arita, Kazuki Saito
Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach. BMC Syst. Biol. 5 (2011)
Hiroshi Tsugawa, Yuki Tsujimot, Masanori Arita, Takeshi Bamba, Eiichiro Fukusaki
GC/MS Based Metabolomics: Development of a Data Mining System for Metabolite Identification by using Soft Independent Modeling of Class Analogy (SIMCA). BMC Bioinform. 12 (2011)
Che-Wei Chang, Ping-Chiang Lyu, Masanori Arita
Reconstructing phylogeny from metabolic substrate-product relationships. BMC Bioinform. 12 (S-1) (2011)
Henning Redestig, Miyako Kusano, Atsushi Fukushima, Fumio Matsuda, Kazuki Saito, Masanori Arita
Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis. BMC Bioinform. 11 (2010)
Hisayuki Horai, Masanori Arita, Yuya Ojima, Yoshito Nihei, Shigehiko Kanaya, Takeshi Nishioka
Traceable Analysis of Multiple-Stage Mass Spectra through Precursor-Product Annotations. GCB (2009)
Masanori Arita, Kazuhiro Suwa, Miwa Yoshimoto, Aki Hirai, Shigehiko Kanaya
Ontology Checking and Integration of Crude-Drug and Kampo Information. BMEI (2009)
Masanori Arita
A pitfall of wiki solution for biological databases. Briefings Bioinform. 10 (3) (2009)
Hisayuki Horai, Masanori Arita, Takaaki Nishioka
Comparison of ESI-MS Spectra in MassBank Database. BMEI (2) (2008)
Masanori Arita, Kazuhiro Suwa
Search extension transforms Wiki into a relational system: A case for flavonoid metabolite database. BioData Min. 1 (2008)
Shigeru Sato, Masanori Arita, Tomoyoshi Soga, Takaaki Nishioka, Masaru Tomita
Time-resolved metabolomics reveals metabolic modulation in rice foliage. BMC Syst. Biol. 2 (2008)
Miyako Kusano, Atsushi Fukushima, Masanori Arita, Pär Jonsson, Thomas Moritz, Makoto Kobayashi, Naomi Hayashi, Takayuki Tohge, Kazuki Saito
Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana. BMC Syst. Biol. 1 (2007)
Kinya Okada, Kiyoshi Asai, Masanori Arita
Flow Model of the Protein-protein Interaction Network for Finding Credible Interactions. APBC (2007)
Hisashi Tuji, Md. Altaf-Ul-Amin, Masanori Arita, Hirokazu Nishio, Yoko Shinbo, Ken Kurokawa, Shigehiko Kanaya
Comparison of Protein Complexes Predicted from PPI Networks by DPClus and Newman Clustering Algorithms. Inf. Media Technol. 2 (1) (2007)
Hideki Nagasaki, Masanori Arita, Tatsuya Nishizawa, Makiko Suwa, Osamu Gotoh
Automated classification of alternative splicing and transcriptional initiation and construction of visual database of classified patterns. Bioinform. 22 (10) (2006)
Hiroyuki Oka, Masanori Arita
Searching Similar Modules in Protein Interaction Netwo. ICDE Workshops (2005)
Masanori Arita
Writing Information into DNA. Aspects of Molecular Computing (2004)
Masanori Arita
Comma-free design for DNA words. Commun. ACM 47 (5) (2004)
Shinichi Kikuchi, Daisuke Tominaga, Masanori Arita, Katsutoshi Takahashi, Masaru Tomita
Dynamic modeling of genetic networks using genetic algorithm and S-system. Bioinform. 19 (5) (2003)
Masanori Arita, Koji Tsuda, Kiyoshi Asai
Modeling splicing sites with pairwise correlations. ECCB (2002)
Satoshi Kobayashi, Tomohiro Kondo, Masanori Arita
On Template Method for DNA Sequence Design. DNA (2002)
Masanori Arita, Satoshi Kobayashi
DNA Sequence Design Using Templates. New Gener. Comput. 20 (3) (2002)
Masanori Arita, Akio Nishikawa, Masami Hagiya, Ken Komiya, Hidetaka Gouzu, Kensaku Sakamoto
Improving Sequence Design for DNA Computing. GECCO (2000)
Masanori Arita
Metabolic reconstruction using shortest paths. Simul. Pract. Theory 8 (1-2) (2000)
Ken Komiya, Kensaku Sakamoto, Hidetaka Gouzu, Shigeyuki Yokoyama, Masanori Arita, Akio Nishikawa, Masami Hagiya
Successive State Transitions with I/O Interface by Molecules. DNA Computing (2000)
Masanori Arita, Kiyoshi Asai, Takaaki Nishioka
Reconstructing Metabolic Pathways with New Enzyme Classification. German Conference on Bioinformatics (2000)
Nobuhiko Morimoto, Masanori Arita, Akira Suyama
Stepwise Generation of Hamiltonian Path with Molecules. BCEC (1997)
Masami Hagiya, Masanori Arita, Daisuke Kiga, Kensaku Sakamoto, Shigeyuki Yokoyama
Towards parallel evaluation and learning of Boolean μ-formulas with molecules. DNA Based Computers (1997)
Nobuhiko Morimoto, Masanori Arita, Akira Suyama
Solid phase DNA solution to the Hamiltonian path problem. DNA Based Computers (1997)
Tomoaki Shimada, Masami Hagiya, Masanori Arita, Shin-ya Nishizaki, Chew Lim Tan
Knowledge-Based Simulation of Regulatory Action in lambda phage. Int. J. Artif. Intell. Tools 4 (4) (1995)