Ken Kurokawa

Publication Activity (10 Years)

Years Active: 2005-2022
Publications (10 Years): 7

Top Topics

Sequence Similarity

Triangle Inequality

Personal Information

Protein Structure Prediction

Top Venues

PLoS Comput. Biol.

Publications

Hitoshi Ishikawa, Hiroshi Mori, Koichi Higashi, Yoshiaki Kato, Tomofumi Sakai, Toshikazu Ebisuzaki, Ken Kurokawa
PZLAST: an ultra-fast sequence similarity search tool implemented on a MIMD processor. Int. J. Netw. Comput. 12 (2) (2022)
Hitoshi Ishikawa, Hiroshi Mori, Koichi Higashi, Yoshiaki Kato, Tomofumi Sakai, Toshikazu Ebisuzaki, Ken Kurokawa
PZLAST: an ultra-fast sequence similarity search tool implemented on a MIMD processor. CANDAR (2021)
Ryota Sugimoto, Luca Nishimura, Phuong Thanh Nguyen, Jumpei Ito, Nicholas F. Parrish, Hiroshi Mori, Ken Kurokawa, Hirofumi Nakaoka, Ituro Inoue
Comprehensive discovery of CRISPR-targeted terminally redundant sequences in the human gut metagenome: Viruses, plasmids, and more. PLoS Comput. Biol. 17 (10) (2021)
Hiroshi Mori, Hitoshi Ishikawa, Koichi Higashi, Yoshiaki Kato, Toshikazu Ebisuzaki, Ken Kurokawa
PZLAST: an ultra-fast amino acid sequence similarity search server against public metagenomes. Bioinform. 37 (21) (2021)
Hiroshi Mori, Takayuki Maruyama, Masahiro Yano, Takuji Yamada, Ken Kurokawa
VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing. BMC Syst. Biol. 12 (S-2) (2018)
Koichi Higashi, Shinya Suzuki, Shin Kurosawa, Hiroshi Mori, Ken Kurokawa
Latent environment allocation of microbial community data. PLoS Comput. Biol. 14 (6) (2018)
Tianmin Wang, Hiroshi Mori, Chong Zhang, Ken Kurokawa, Xin-Hui Xing, Takuji Yamada
DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe. BMC Bioinform. 16 (2015)
Masahiro Yano, Hiroshi Mori, Yutaka Akiyama, Takuji Yamada, Ken Kurokawa
CLAST: CUDA implemented large-scale alignment search tool. BMC Bioinform. 15 (2014)
Manimozhiyan Arumugam, Jeroen Raes, Eric Pelletier, Denis Le Paslier, Takuji Yamada, Daniel R. Mende, Gabriel R. Fernandes, Julien Tap, Thomas Brüls, Jean-Michel Batto, Marcelo Bertalan, Natalia Borruel, Francesc Casellas, Leyden Fernández, Laurent Gautier, Torben Hansen, Masahira Hattori, Tetsuya Hayashi, Michiel Kleerebezem, Ken Kurokawa, Marion Leclerc, Florence Levenez, Chaysavanh Manichanh, Henrik Bjørn Nielsen, Trine Rask Nielsen, Nicolas Pons, Julie Poulain, Junjie Qin, Thomas Sicheritz-Pontén, Sebastian Tims, David Torrents, Edgardo Ugarte, Erwin G. Zoetendal, Jun Wang, Francisco Guarner, Oluf Pedersen, Willem M. de Vos, Søren Brunak, Joël Dore, MetaHIT consortium, Jean Weissenbach, S. Dusko Ehrlich, Peer Bork
Addendum: Enterotypes of the human gut microbiome. Nat. 506 (7489) (2014)
Hiroshi Mori, Fumito Maruyama, Ken Kurokawa
VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences. BMC Bioinform. 11 (2010)
Hisashi Tuji, Md. Altaf-Ul-Amin, Masanori Arita, Hirokazu Nishio, Yoko Shinbo, Ken Kurokawa, Shigehiko Kanaya
Comparison of Protein Complexes Predicted from PPI Networks by DPClus and Newman Clustering Algorithms. Inf. Media Technol. 2 (1) (2007)
Hijiri Maeno, Md. Altaf-Ul-Amin, Yoko Shinbo, Ken Kurokawa, Naotake Ogasawara, Shigehiko Kanaya
Elucidating Conservation of Genes in Multiple Genomes Based on Graphs Configured by Bidirectional Best-Hit Relationships. Inf. Media Technol. 2 (1) (2007)
Md. Altaf-Ul-Amin, Yoko Shinbo, Kenji Mihara, Ken Kurokawa, Shigehiko Kanaya
Development and implementation of an algorithm for detection of protein complexes in large interaction networks. BMC Bioinform. 7 (2006)
Md. Altaf-Ul-Amin, Toshihiro Koma, Ken Kurokawa, Shigehiko Kanaya
Prediction of Protein Functions Based on Protein-Protein Interaction Networks: A Min-Cut Approach. ICDE Workshops (2005)